Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa09g1176 ATGGGCTTCATCATTGGCATCATCATCGGGATCGCCTTTGGCATCGCTTTGATCTTCGTTTTTTCTCGTTTCCAGACCACCCGATCCCAGCATCGATCTCATTTGGCAAAGACAATCGCAGCTTTTGCCAGGATGAAAGTGGAAGATTCCAAAAAACTTATTCCTCCTAAGTACTATCCACCCTGGGTGTTAAAGTGGCTAAATACCCAACTCGATAAGGTTTGGCCATATATTAATGAGGCAGCATCACAGTTGATAAGAAGCAATCTGGAACCCATTCTCGCACAATATACACCAATTATCCTATCTTCAATCACCTTCTCCAAGTTGACTCTTGGTACTGTGGCTCCACAGATTACAGGAATTTCTATTGTTGAAGCAGAAAGTGGGGACGACGGAGTGACGATGGAATTAGAGCTACAGTGGGATGGTAACCCCAGTATCATACTTGATATTAAAACTCGAGTTGGAGTTGTACTGCCTGTACAGGTAAAAAATGTCCGATTCACTGGGGTTTTCAGGTTGATCTTTAAACCCCTAGTAAATGAGTTTCCTTGCATAGGAGCTGTTTCTTATTCCTTGAGAGAGAAGAAACATCTGGACTTTATTCTTAAGGTTGTTGGTGGTGACATAACAACTCTCCCGGGGATATCTGATGCTATAGAGGAAACAATTCGAGATGCCATTGAGGATTCTATAACATGGCCAGTACGCAAAACTGTACCAATTATACCAGGGGATTACAGTGACCTGGAGTTGAAACCTGTGGGAACCCTAGAAGTAAAACTAGTGCAAGCGAAGAATTTGGCAAACAAAGATCTGATCGGAAAATCCGATCCTTTGGCTGTTCTATTCGTACGTCCGCTCCGTGACAGAATCCAAACCAGCAAGACAATCAACAACGCATTGAACCCGGTGTGGAACGAGAACTTTGAGTTCACCGTTGAAGATGTGTCGACGCAGCACTTGACTGTGCGAGTTTTCGACGATGAAGGCATTCAGGCTAATCAGCTTATTGGGTGTGCCCAAGTGCCACTGAAGGACCTTCAACCTGGTAAAGTAAAGGATGTATGGTTGAAACTTGTCAAGGATTTGGAGGTCCAAAGAGATAAAAAATACAGGGGTGAGGTGCACTTGGAGCTATTGTACTGCCCATACGGTGTGGAAAGCAGCTTCGCAGAATTGTTCAGTCTTAATTACGGATTGACCACATTCGAGAGGGCGATTAAGAGTGCGTCGGGTGTGGATTTGAACAGATCACAGAAAAATAAATATGTGATAGTGAGAGGGGTGCTCTCAGTGACAGTCATTTCAGCAGAAGACCTGCCAGTCATGGACTTAACGGGCAAGGCCAACGCTTTTGTGCTCCTCATCTTGAAAAAAGCACAACAACAAAAAAAAACCAGGGTTGCAACGTCAGGTCTAAACCCAGTTTGGAATCAGACATTCGACTTTGTTGTGGAGGACGCCTTGCATGAAATGTTGATTCTTGAAGTCTGGGATCATGATCTTATTGGGAAGGACAAAATTGGAAGAGTAACGATGACACTTACTAGGGTCATCCTAGAAGGGGAACTTCAGGAGAGTTTTGCGTTGGATGAAGCTAAATCTGGAAAACTTAATCTGCATCTTAAGTGGACTCCACAACATAAGTATAGAGATCCTTAA 1668 0.4371 MGFIIGIIIGIAFGIALIFVFSRFQTTRSQHRSHLAKTIAAFARMKVEDSKKLIPPKYYPPWVLKWLNTQLDKVWPYINEAASQLIRSNLEPILAQYTPIILSSITFSKLTLGTVAPQITGISIVEAESGDDGVTMELELQWDGNPSIILDIKTRVGVVLPVQVKNVRFTGVFRLIFKPLVNEFPCIGAVSYSLREKKHLDFILKVVGGDITTLPGISDAIEETIRDAIEDSITWPVRKTVPIIPGDYSDLELKPVGTLEVKLVQAKNLANKDLIGKSDPLAVLFVRPLRDRIQTSKTINNALNPVWNENFEFTVEDVSTQHLTVRVFDDEGIQANQLIGCAQVPLKDLQPGKVKDVWLKLVKDLEVQRDKKYRGEVHLELLYCPYGVESSFAELFSLNYGLTTFERAIKSASGVDLNRSQKNKYVIVRGVLSVTVISAEDLPVMDLTGKANAFVLLILKKAQQQKKTRVATSGLNPVWNQTFDFVVEDALHEMLILEVWDHDLIGKDKIGRVTMTLTRVILEGELQESFALDEAKSGKLNLHLKWTPQHKYRDP 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa09g1176 555 CDD SMP_SYT 60 243 - -
Bisa09g1176 555 ProSiteProfiles C2 domain profile. 238 359 IPR000008 -
Bisa09g1176 555 Pfam C2 domain 257 361 IPR000008 -
Bisa09g1176 555 Pfam C2 domain 430 528 IPR000008 -
Bisa09g1176 555 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 255 386 IPR035892 -
Bisa09g1176 555 ProSiteProfiles C2 domain profile. 409 530 IPR000008 -
Bisa09g1176 555 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 1 546 IPR045050 GO:0008289
Bisa09g1176 555 CDD C2 432 528 - -
Bisa09g1176 555 Gene3D C2 domain 253 391 IPR035892 -
Bisa09g1176 555 FunFam Plant synaptotagmin 252 394 - -
Bisa09g1176 555 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 65 244 IPR039010 -
Bisa09g1176 555 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 424 549 IPR035892 -
Bisa09g1176 555 FunFam Extended synaptotagmin-2 411 550 - -
Bisa09g1176 555 Gene3D C2 domain 412 548 IPR035892 -
Bisa09g1176 555 CDD C2 259 361 - -
Bisa09g1176 555 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 60 244 IPR031468 GO:0008289
Bisa09g1176 555 SMART C2_3c 431 529 IPR000008 -
Bisa09g1176 555 SMART C2_3c 258 358 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa09g1176 Bisa-ChrBisa09 17019610 17024877 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa09g1176 432 520 Lipid Metabolism Gene Families AT1G51570 35.955 9.54e-07 50.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa09g1176 09 17019610 17024877 Bisa09g1176 09 17019610 17024877 ECH