Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele01g0653 ATGGGCTTTATCAGTGGCATGATCATGGGCATCGCCCTTGGCCTCTCTTTGATCTTCGCTTTTGCTCGTTTCCAAAGTTACCGATCCAAACGTCGTTCCCATTTGGCGGAAGCCATAGCAGCTTTTGCCAGGATGAAGACGATGGAAGATTCTAGAAGAATTGTACCCCCCGAGTCGTGTCCCCCCTGGTTAAATTGGCTCAATACCCATCTCCAGAAAATCTGGCCTTATGTTAACGAGGCGGCATCAGAGTTGATAAGAAGCAATGTGGAACCCATTCTTGATCAATACACACCCAAAATCCTGTCTTCAATCACCTTCTCCAAGTTGACTCTTGGTACTGTGGCACCTCAATTCACAGGAGTGGCCATTGTTGAAGAAGAAAGTGGCGCTGATGGAGTGACTATGGAATTGGAGATGCAGTGGGATGGTAACCCCACTATTGCATTTGATGTTAAAACTCGAGTTGGAGTTGTAATACCTGTTAAGGTAAAAGATATAGGATTCACTGGCGTTTTCAGGCTCATCTTCAAACCATTAGTAGATGAGTTCCCTTCCTTTGGAGCTGTCTGTTATTCCTTGCGAGAAAAGAAACATCTGGACTTTACTCTTAAGGTTTCTGGTGGTGATATTTCAACTCTCCCAGGCGTATCTGATGCTATAGAGGAAACAATTCGAGATGCTATTGAGGATTCTATAACCTGGCCAGTACGCAAAATTATACCAATTATACCAGGGGATTACAGCTTCCTTGAGCTAAAACCAGTTGGAATACTAGAAGTAAAACTAGTGCAAGCAAAGGACTTGGCAAATAAAGATCTGATTGGCAAATCCGATCCTTTTGCTACTTTATTCGTACGCCCTCTTCATGACAGAGTCCAAAACAGCAAAACAATCAACAACGAGTTGAATCCAGTATGGAACGAGAACTTCGAGTTCACAGTGGAAGATGCCTCAACTCAGCGCTTGACTGTAAGAATATTTGATGATGAAGGCGTTGGGGCTGATCAGCTCATTGGGTGCGCCCAAGTGCCATTAAAGGACCTTCAACCTGGAAAAGTTGAGATCTTCTGGTTGAAACTAGTCAAGGATTTGGAGGTCCAAAGAGACCAAAAATACAGGGGTGAGGTTCACTTGGAGTTATTATACTGTCCATTTGGTGTTGAAAGCAACTTCACAAACCTGTTTAGTGGTAGCTTTGGGCTTACCACTTTCGAGAAGACGATTAAGAGTTCATCTGATCAGACACAGGGTGGTGATGTTAACAAATCAAAGAAAAAATATGTGATAGTAAGAGGAGTTCTATCTGTGACAGTGATATCAGCTGAAGACTTACCAGATATGGACTTACTGGGAAAAACTAACGCTTATGTAGAGCTCGTGTTGAAGAAAGCAGACCAAAAACACAGGACCAGGGTTGCAAATTCAGGAGTAAACCCTGTTTGGAATCAAACATTTGACTTCGTTGTGGAGGATGCGTTACATGAAATGCTGATTCTTGAAGTCTGGGATCAAGATCTCATCGGGAAGGATAAAATTGGAAGAGTGACGATGACACTGACAAGGGTAATCCTAAGAAAGGAAGTTCAGGATAGTTTTGCGTTAGATGGAGCTAAATCTGGAAAATTAAACCTGCATCTTCGCTGGACTCCACAACTCATGTATCGAGATCCTTGA 1677 0.4293 MGFISGMIMGIALGLSLIFAFARFQSYRSKRRSHLAEAIAAFARMKTMEDSRRIVPPESCPPWLNWLNTHLQKIWPYVNEAASELIRSNVEPILDQYTPKILSSITFSKLTLGTVAPQFTGVAIVEEESGADGVTMELEMQWDGNPTIAFDVKTRVGVVIPVKVKDIGFTGVFRLIFKPLVDEFPSFGAVCYSLREKKHLDFTLKVSGGDISTLPGVSDAIEETIRDAIEDSITWPVRKIIPIIPGDYSFLELKPVGILEVKLVQAKDLANKDLIGKSDPFATLFVRPLHDRVQNSKTINNELNPVWNENFEFTVEDASTQRLTVRIFDDEGVGADQLIGCAQVPLKDLQPGKVEIFWLKLVKDLEVQRDQKYRGEVHLELLYCPFGVESNFTNLFSGSFGLTTFEKTIKSSSDQTQGGDVNKSKKKYVIVRGVLSVTVISAEDLPDMDLLGKTNAYVELVLKKADQKHRTRVANSGVNPVWNQTFDFVVEDALHEMLILEVWDQDLIGKDKIGRVTMTLTRVILRKEVQDSFALDGAKSGKLNLHLRWTPQLMYRDP 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele01g0653 558 FunFam Extended synaptotagmin-2 412 553 - -
Lele01g0653 558 ProSiteProfiles C2 domain profile. 238 359 IPR000008 -
Lele01g0653 558 Gene3D C2 domain 416 552 IPR035892 -
Lele01g0653 558 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 60 244 IPR031468 GO:0008289
Lele01g0653 558 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 255 386 IPR035892 -
Lele01g0653 558 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 427 553 IPR035892 -
Lele01g0653 558 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 1 549 IPR045050 GO:0008289
Lele01g0653 558 ProSiteProfiles C2 domain profile. 415 533 IPR000008 -
Lele01g0653 558 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 65 243 IPR039010 -
Lele01g0653 558 CDD C2 435 531 - -
Lele01g0653 558 SMART C2_3c 258 358 IPR000008 -
Lele01g0653 558 SMART C2_3c 434 532 IPR000008 -
Lele01g0653 558 CDD C2 259 361 - -
Lele01g0653 558 Pfam C2 domain 433 532 IPR000008 -
Lele01g0653 558 Pfam C2 domain 257 361 IPR000008 -
Lele01g0653 558 Gene3D C2 domain 253 392 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele01g0653 Lele-ChrLele01 3821234 3824028 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele01g0653 408 526 Lipid Metabolism Gene Families AT1G51570 33.333 1.29e-08 55.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele01g0653 01 3821234 3824028 Lele25g0631 25 3981205 3983952 CCT
Lele01g0653 01 3821234 3824028 Lele26g0642 26 4077546 4079954 CCT
Lele01g0653 01 3821234 3824028 Lele27g1457 27 20701572 20704112 CCT
Lele01g0653 01 3821234 3824028 Lele28g0626 28 3994453 3996857 CCT
Lele01g0653 01 3821234 3824028 Lele01g0653 01 3821234 3824028 ECH
Lele01g0653 01 3821234 3824028 Lele03g0652 03 3826537 3829315 hybridization
Lele01g0653 01 3821234 3824028 Lele04g0659 04 3983505 3987184 hybridization