Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g1613 ATGAACTTCTCCATAAAATCCATGTTTAAGCTCGAACAAGGACGCCCAAGCAGATTACACCTGAAAATGGGCTTCATAAGTGGTATCATCATTGGCTTCGGCTTTGGCGTCGCTTTGATTTTCGCTTTCTCTCGTTTCCAACGTAGTCGATCCAAGCGTCGTTCCGATTTGGTGAATACGGTCGCAGCCTTTGCCAGGATGACAATGGAGGATTCCAAAACAGTTATCCCCCCTCAGTTCTATCCACCCTGGGTGGTCTTCACTCGCAGACAGAATTCTTCAACCATGCAGTTAACTTGGCTCAATACCCAACTCAAGAAGATTTGGCCATATGTTAATGAGGCAGCCTCCGAGTTGATAAGAAGCAATGTGGAACCCATTCTTGAACAATATACACCAACCCTCTTATCTTCAATCAAGTTCTCCAAGTTGACACTTGGTACTGTGGCTCCCCAGTTTACAGGTGACAATGATGCATTCTTTCTATCTTGTATGTCTAATGGAATATCTATTGTTGAAGATGAAAGTGGGGGTGATGGAGTGACTATGGAATTAGAGATGCAGTGGGATGGTAACCCCAATATCGTTCTTGATATTAAAACTCGAGTTGGTGTTGTACTGCCTGTAAAGGTAAAAAATATTGGATTCACTGGGGTTTTCAGGTTGATCTTCAAACCACTGGTAGATGAGTTTCCTTCCATTGGAGCTGTTTGTTATTCTTTGAGAGAAAAGAAACATCTGGAGTTTACTCTTAAGGTTGTTGGTGGGGATATTTCAACTCTCCCAGGGGTATCTGATGCTATAGAGGAAACAATTCTAGATGCTATAGAGGATTCTATAACGTGGCCAGTACGCAAAATAATTCCAATTATACCAGGGGATTACAGTTACCTGGAGTTAAAACCGGTTGGAAAACTAGAAGTGAAACTAGTGCAAGCGAAGAACTTAGCAAATAAAGATCTGATCGGCAAATCCGATCCTTTTGCTGTTTTATTTGTACGTCCGCTTCGCAACAGAACCAAAACCAGCAAAACAATCAACAACCAGTTGAATCCAGTGTGGAATGAGAACTTTGAGTTCATTGTTGAAGATGCGTCAACCCAGCACTTGACTGTCAGAATTTTTGATGATGAAGGCATTCAGGCTAATCAGTTTATTGGGTGTGCCATAGTGCCGCTAAAGGACCTTGAGCCTGGTAAAGTCAAGGATGTATGGTTGAAACTGGTCAAGGATTTGGAGGTCCAAAGAGATAAAAAATACAGGGGTGAGGTGCACCTGGAGCTCTTGTACTGCCCATTTGGTGTTGAGAGCAGCTTTACAAACATATTCAGCCCTGATTACTCATTAACCACTTTCGAGAAGGTCCTTAAGAGTGAAGCTGATCAAACACATGCTGGCGATCTTAACGAGTCACAGAGGAAATATGTGATTGTAAGAGGGGTCCTATCTGTCACAGTGATATCGGCTCAAGACTTGCCAGCCGTGGATTTAAAGGGCGGGCCTGACCCTTTTGTGGTCCTTATGTTGAAAAAAGCAGACCGAAAACTCAAGACTCGGGTTGTAACTGAAAGCCTCAACCCAGTTTGGAATCAAACATTTGACTTTGTAGTGGAGGGTGGCTTACATGAAATGTTAATTGTTGAAGTCTGGGATCATGATACTATTGGGAAGAACAAAATTGGAAGAGTGACAATGACACTCACCAGGGTCATCCTACAAGGGGAACTGGAGGACAGTTTTCCATTAGATGGAGCTACATCTGGAAAACTTACTCTGCATCTTCGGTGGACTCCGCAGCCTAAGTATCGGGATCCTTAA 1818 0.4307 MNFSIKSMFKLEQGRPSRLHLKMGFISGIIIGFGFGVALIFAFSRFQRSRSKRRSDLVNTVAAFARMTMEDSKTVIPPQFYPPWVVFTRRQNSSTMQLTWLNTQLKKIWPYVNEAASELIRSNVEPILEQYTPTLLSSIKFSKLTLGTVAPQFTGDNDAFFLSCMSNGISIVEDESGGDGVTMELEMQWDGNPNIVLDIKTRVGVVLPVKVKNIGFTGVFRLIFKPLVDEFPSIGAVCYSLREKKHLEFTLKVVGGDISTLPGVSDAIEETILDAIEDSITWPVRKIIPIIPGDYSYLELKPVGKLEVKLVQAKNLANKDLIGKSDPFAVLFVRPLRNRTKTSKTINNQLNPVWNENFEFIVEDASTQHLTVRIFDDEGIQANQFIGCAIVPLKDLEPGKVKDVWLKLVKDLEVQRDKKYRGEVHLELLYCPFGVESSFTNIFSPDYSLTTFEKVLKSEADQTHAGDLNESQRKYVIVRGVLSVTVISAQDLPAVDLKGGPDPFVVLMLKKADRKLKTRVVTESLNPVWNQTFDFVVEGGLHEMLIVEVWDHDTIGKNKIGRVTMTLTRVILQGELEDSFPLDGATSGKLTLHLRWTPQPKYRDP 605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g1613 605 FunFam Plant synaptotagmin 299 441 - -
Glsi08g1613 605 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 97 290 IPR039010 -
Glsi08g1613 605 CDD SMP_SYT 82 290 - -
Glsi08g1613 605 Pfam C2 domain 304 408 IPR000008 -
Glsi08g1613 605 Pfam C2 domain 480 582 IPR000008 -
Glsi08g1613 605 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 302 433 IPR035892 -
Glsi08g1613 605 ProSiteProfiles C2 domain profile. 287 406 IPR000008 -
Glsi08g1613 605 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 474 600 IPR035892 -
Glsi08g1613 605 PRINTS C2 domain signature 545 553 IPR000008 -
Glsi08g1613 605 PRINTS C2 domain signature 497 509 IPR000008 -
Glsi08g1613 605 PRINTS C2 domain signature 523 536 IPR000008 -
Glsi08g1613 605 SMART C2_3c 481 579 IPR000008 -
Glsi08g1613 605 SMART C2_3c 305 405 IPR000008 -
Glsi08g1613 605 FunFam Extended synaptotagmin-2 459 600 - -
Glsi08g1613 605 Gene3D C2 domain 462 598 IPR035892 -
Glsi08g1613 605 Gene3D C2 domain 297 432 IPR035892 -
Glsi08g1613 605 CDD C2 306 408 - -
Glsi08g1613 605 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 94 291 IPR031468 GO:0008289
Glsi08g1613 605 CDD C2 482 582 - -
Glsi08g1613 605 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 23 596 IPR045050 GO:0008289
Glsi08g1613 605 ProSiteProfiles C2 domain profile. 464 580 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g1613 Glsi-ChrGlsi08 11495680 11499545 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g1613 482 570 Lipid Metabolism Gene Families AT1G51570 34.831 1.72e-06 49.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi08g1613 08 11495680 11499545 Glsi08g1613 08 11495680 11499545 ECH