Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3475 ATGGGATTCATCAGCGGCATGATCGCTGGTATCGCCATTGGTATCGTATTGATCGTCGCTTTCGCTCGTCATGAAAGCGTCCGATCTAAGCGTCGCTCCGGTTTGGCGAAGACGATAGCAGTGTTTGCGAGGATGACGGTGGAGGATTCCAGAAGACTTTTGCCTCCTAAGTTCTATCCAGCATGGGTGTTAAATTGGCTTAATAGGCAACTCAATAAGATTTGGCCATACGTTAATGACGCAGCGTCAGAGTTGATAAGAAGCAACGTGGAACCCATTCTTGAACAATATAAGCCGATTATTTTGTCTTCTCTCACCTTCTCCAAGTTGACCCTTGGCACTGTGGCTCCACAATTTACAGGAGTTTCAATTGTTGAAGAGCATAGTGGGCCTGATGGGGTGACTATGGATCTTGAGATGCAGTGGGATGGTAACCCGAATATCGTCCTTGACATTAAAACCAGAGTTGGTGTTGTACTTCCTGTACAGGTAAAAAATATTGGATTCACTGGGGTTTTCAGGTTGATCTTCAAACCACTAGTGAATGAGTTCCCCGCTTTTGGTGCTATTTGTTTTTCCTTGAAAGAAAAGAAAGATCTGGATTTTACTCTTAAGGTTATTGGTGGCGATATATCAGCTTTACCGGGGATATCTGATGCTATAGAGGAAACAATTAGAGACGCCATTGAAGACTCTATAACTTGGCCAGTACGcaaaattataccaattataCCGGGAGATTACAGTAATCTAGAGTTGAAACCGGTTGGAATACTAGAAGTAAAACTAGTACAAGCAAAGAACTTAACAAATAAAGATGTGATTGGGAAATCCGATCCTTATGCTGTCTTGTTTGTACGCCCGCTTCGTGACAGAACCAAAACCAGTAAAATAATGAACAACCAGTTGAATCCAGTATGGAATGAGCACTATGAGTTCATCATTGAAGATGCGTCAACGCAGCACTTGACCATAAGAATTTTCGATGATGAAGGCATTCAGGCTTCTGAACTTATTGGCTGTGCCCAAGTTTCGCTGAAGGACCTTGAACCTGGTAAAGTCAAGGATGTATGGCTGAAACTGGTTAAGGATTTGGAGATCCATAGAGATAACAAATACAGGGGTGAGGTGCACTTGGAGCTCTTGTACTGCCCATTTGGAGTCGAAAACAGCTTTAAGAACCCTTTTGACCCTGATTTCTCATTAACCACGTTCGAGAAGACCCTCAAGAGTGGAACTGGTGACGCAGAAGCTGAGGATCTTATAGGATCATCACGGAGGAGAAGCAACGTGATTGTAAGAGGGGTTCTATCTGTGACAGTGATTTCAGCTGAAGACTTGCCAGCAGTGGACTTAATGGGCAAGGCTGATCCATTTGTTGTCCTTATGTtgaaaaaaacagaaaaaaaactcaagacCAGAGTTGTAAATGAATCCCTAAACCCAGTTTGGAATCAAacatttgattttgttgtgGAGGATGGCTTACACGAAATGTTAATTATTGAAGTGTACGATCATGACACATTTGGCAAGGAAAAAATTGGAAGAGTGATCTTGACACTGACTAAGGTCATCTTAGAAGGGGAATACAGTGAAACTTTTCCTCTAGATGGAGCTAAATCCGGAAATATTTCTTTGCATTTGAAGTGGACTCCACAGCACAAGTTCCGGGATCCTTAG 1683 0.4141 MGFISGMIAGIAIGIVLIVAFARHESVRSKRRSGLAKTIAVFARMTVEDSRRLLPPKFYPAWVLNWLNRQLNKIWPYVNDAASELIRSNVEPILEQYKPIILSSLTFSKLTLGTVAPQFTGVSIVEEHSGPDGVTMDLEMQWDGNPNIVLDIKTRVGVVLPVQVKNIGFTGVFRLIFKPLVNEFPAFGAICFSLKEKKDLDFTLKVIGGDISALPGISDAIEETIRDAIEDSITWPVRKIIPIIPGDYSNLELKPVGILEVKLVQAKNLTNKDVIGKSDPYAVLFVRPLRDRTKTSKIMNNQLNPVWNEHYEFIIEDASTQHLTIRIFDDEGIQASELIGCAQVSLKDLEPGKVKDVWLKLVKDLEIHRDNKYRGEVHLELLYCPFGVENSFKNPFDPDFSLTTFEKTLKSGTGDAEAEDLIGSSRRRSNVIVRGVLSVTVISAEDLPAVDLMGKADPFVVLMLKKTEKKLKTRVVNESLNPVWNQTFDFVVEDGLHEMLIIEVYDHDTFGKEKIGRVILTLTKVILEGEYSETFPLDGAKSGNISLHLKWTPQHKFRDP 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3475 560 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 1 559 IPR045050 GO:0008289
Ssu1g3475 560 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 60 244 IPR031468 GO:0008289
Ssu1g3475 560 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 431 554 IPR035892 -
Ssu1g3475 560 PRINTS C2 domain signature 478 491 IPR000008 -
Ssu1g3475 560 PRINTS C2 domain signature 452 464 IPR000008 -
Ssu1g3475 560 PRINTS C2 domain signature 500 508 IPR000008 -
Ssu1g3475 560 ProSiteProfiles C2 domain profile. 238 359 IPR000008 -
Ssu1g3475 560 CDD C2 437 537 - -
Ssu1g3475 560 Gene3D C2 domain 432 558 IPR035892 -
Ssu1g3475 560 Gene3D C2 domain 253 391 IPR035892 -
Ssu1g3475 560 Pfam C2 domain 257 361 IPR000008 -
Ssu1g3475 560 Pfam C2 domain 435 537 IPR000008 -
Ssu1g3475 560 PANTHER SYNAPTOTAGMIN-4 1 559 - -
Ssu1g3475 560 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 65 243 IPR039010 -
Ssu1g3475 560 SMART C2_3c 436 534 IPR000008 -
Ssu1g3475 560 SMART C2_3c 258 358 IPR000008 -
Ssu1g3475 560 ProSiteProfiles C2 domain profile. 417 535 IPR000008 -
Ssu1g3475 560 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 255 386 IPR035892 -
Ssu1g3475 560 CDD C2 259 361 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3475 Ssu-Chr1 89046443 89053908 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3475 392 525 Lipid Metabolism Gene Families AT1G51570 31.159 3.33e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3475 - - gmx:100787972 1008.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3475 1 89046443 89053908 Ssu1g3475 1 89046443 89053908 ECH