Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g03103 ATGGGATTCTTCAGCGGCATGATTCTCGGTATCGCCATTGGTATCGTGATGATCATCGGTTTCGCTCGTCACGAGAGCGTTCGATCCAAACGTCGCTCCGATTTGGCGAAGACGATAGCAGTGTTTGCGAGAATGACAGTGGAAGATTCCAGAAAACTTTTGCCTCCTAAGTTCTATCCATCATGGGTGGTCTTCACACAGAGACAGAAGTTAAATTGGCTTAATGTCCAACTCACGAGGATTTGGCCATATGTTGATGAGGCAGTGTCAGAGTTGATAAGAACCAGTGTGGAACCAATTCTTGAACAATATACACCGGTTGTTTTGGCTTCTCTCACCTTCTCCAAGTTGACCCTTGGCACTGTGGCTCCACAATTTACAGGAGTTACTATTCTTGAAGAGGATAGTGGGCCTGATGGTGTGACTATGGATATTGAGATGCAATGGGATGGTAACCCGAATATCGTTCTTGACATCAAAACCCGAGTTGGTGTCGTACTTCCTGTACAGGTAAAAGATATTGGATTCACTGGGGTTTTCAGGTTGATCTTCAAACCACTAGTGAATGAGTTTCCGGGTTTCGGAGCTGTTTGTTTTTCCTTGAAAGAAAAGAAAGATCTGGATTTTACTCTGAAGGTTATTGGTGGTGATTTATCAGCCTTACCGGGAGTATCTGATGCAATAGAGGAAACGATTAGAGATGCGATTGAAGACTCTATAACTTGGCCTGTGCGCCAAATTATACCCATTTTACCTGGAGATTACAGTAATCTAGAGTTGAAACCGGTTGGAATACTGGAAGTTAAACTTGTGCAAGCAAGGAACTTAACAAATAAAGATTTGATTGGGAAGTCCGATCCCTATGCTGTCCTTTTTGTACGCCCGCTTCGTGCCAGAACCAAAAGCAGTAAAGTAGTGAACAACCAGTTGAGTCCAATATGGAATGAACACTTTGAATTCACTATTGAAGATGCGGCAACGCAGCACTTGACCATAAGAATTTTCGATGATGAAGGCATTCAGGCTTCTGAACTTATTGGCTGTGCCAAAGTTTCACTGCAGGAGCTCGAACCTGGTAAAGTCAAGGATGTATGGCTTAAGCTGGTTAAGGATTTGGAGATCCAAAGAGATAACAAATACAGGGGTGAGGTGCATTTGGAGCTCTTGTACTGCCCAATTGGAGTGGAAAGCGCCATCAAGAACCCTTTTGACCCTGATTTCTCATTAACCTCGTTGGAGAAGACCCTCAAGAGTGGTGAGGGAGAGGATGAAGATCCTACAGGGTCACGTAAGAGAAGCAACGTGATCGTAAGAGGGGTTCTATCTGTCACGGTGATTTCAGCTGAAGACTTACCAGTAGTGGACTTAATGGGCAAGGCTGATCCATTTGTTGTCCTTAGTTTGAGAAAAACAGAAAAAAAACTCAAGACCAGAGTTGTAAATGAATCCCTAAACCCAGTTTGGAATCAAACATTTGATTTTGTTGTGGAGGATGGCTTACACGAAATGTTAATTCTGGAAGTCTACGATCATGATACGTTTGGCAAGGAAAAAATTGGAAGAGTGATCTTAACACTGACTAAGGTCATCTTAGAAGGAGAATACAATGAAACTTATCCTCTAGATGGAGCTAAATCCGGAAACATTTCTTTATATTTGAAGTGGACTCCGCAGCACAAATTCCGGGATACTTAG 1695 0.4283 MGFFSGMILGIAIGIVMIIGFARHESVRSKRRSDLAKTIAVFARMTVEDSRKLLPPKFYPSWVVFTQRQKLNWLNVQLTRIWPYVDEAVSELIRTSVEPILEQYTPVVLASLTFSKLTLGTVAPQFTGVTILEEDSGPDGVTMDIEMQWDGNPNIVLDIKTRVGVVLPVQVKDIGFTGVFRLIFKPLVNEFPGFGAVCFSLKEKKDLDFTLKVIGGDLSALPGVSDAIEETIRDAIEDSITWPVRQIIPILPGDYSNLELKPVGILEVKLVQARNLTNKDLIGKSDPYAVLFVRPLRARTKSSKVVNNQLSPIWNEHFEFTIEDAATQHLTIRIFDDEGIQASELIGCAKVSLQELEPGKVKDVWLKLVKDLEIQRDNKYRGEVHLELLYCPIGVESAIKNPFDPDFSLTSLEKTLKSGEGEDEDPTGSRKRSNVIVRGVLSVTVISAEDLPVVDLMGKADPFVVLSLRKTEKKLKTRVVNESLNPVWNQTFDFVVEDGLHEMLILEVYDHDTFGKEKIGRVILTLTKVILEGEYNETYPLDGAKSGNISLYLKWTPQHKFRDT 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g03103 564 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 67 251 IPR031468 GO:0008289
Viun9g03103 564 CDD SMP_SYT 60 250 - -
Viun9g03103 564 FunFam Extended synaptotagmin-2 422 559 - -
Viun9g03103 564 CDD C2 266 368 - -
Viun9g03103 564 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 435 558 IPR035892 -
Viun9g03103 564 SMART C2_3c 265 365 IPR000008 -
Viun9g03103 564 SMART C2_3c 440 538 IPR000008 -
Viun9g03103 564 CDD C2 441 541 - -
Viun9g03103 564 Pfam C2 domain 439 541 IPR000008 -
Viun9g03103 564 Pfam C2 domain 264 368 IPR000008 -
Viun9g03103 564 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 70 250 IPR039010 -
Viun9g03103 564 FunFam Plant synaptotagmin 259 401 - -
Viun9g03103 564 ProSiteProfiles C2 domain profile. 243 366 IPR000008 -
Viun9g03103 564 PRINTS C2 domain signature 504 512 IPR000008 -
Viun9g03103 564 PRINTS C2 domain signature 482 495 IPR000008 -
Viun9g03103 564 PRINTS C2 domain signature 456 468 IPR000008 -
Viun9g03103 564 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 262 393 IPR035892 -
Viun9g03103 564 ProSiteProfiles C2 domain profile. 422 539 IPR000008 -
Viun9g03103 564 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 1 555 IPR045050 GO:0008289
Viun9g03103 564 Gene3D C2 domain 436 563 IPR035892 -
Viun9g03103 564 Gene3D C2 domain 260 399 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g03103 Viun-Chr9 38559481 38566208 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g03103 265 529 Lipid Metabolism Gene Families AT4G00700 24.632 3.13e-12 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g03103 - - gmx:100787972 990.334
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g03103 9 38559481 38566208 Viun9g03103 9 38559481 38566208 ECH