Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g02388 ATGGAGTTGGAGATGCAGTGGGATGGTAATCCAAATATCACGCTTGACATTAAAACTCTAGTTGGGGTTGCACTTCCTGTGCAGGTAAAAGACATAGCATTCACTGGGATTTTTAGGTTGATCTTCAAACCACTAGTAGATGAGTTTCCTACATTTGGAGCAGTCTCCTGTTCCTTGAGACATAAGAAATTGCTGGATTTTACTCTTAAGATCGGTGGCGGTGATGTATCCACCATACCTGGGATTAAAGACGCTGTAGAGGAAACAATAAGAGATGCCATTGAAGATTCTATTACATGGCCTGCACGAAAAATTGTACCGATTCTACCAGGGGATTACAGTGACCTTGAGTTGAAGCCTGTGGGAACCTTAGAAGTTAAGCTTGTGCAAGCAAAGGATCTAGCAAATAAGGATTTGATAGGGAAGTCTGATCCTTTTGCTGTCTTATTTGTACGCCCACTTCGTGACCAGACCAAAAGAAGCAAGACGATAAAAAATGAGTTGAATCCAGTGTGGAACGAACACTTTGAATTCACGGTTGAGGAAGTATCTACTCAACACTTTACGGTGAGAGTTTTTGACGATGAAGGTATCTCGTCCTCTGAACTGATAGGATGTGCCCAAGTGCAACTGAAGGACCTTGAACCTGGTAAAGTCAAGGACGTGTGGTTGAACTTGGTTAAGGATTTGGAGGGTTATAGAGAAAAAAAATACAGAGGCCAGGTGCACCTGGAGCTCTTATATTGTCCATATGGCGTAAAGTGTGGCCTTGCAAATCCATTTGATCCTGACTACGCTTTAACCATTTTGGAAAAGTCCCTTAATAGGGGAACTGACAAGGTAGAGACTAATCAGACGAGAAATAGAGCAATTCTGAGAGGGGTGCTGTCTGTGACAGTGATTTCTGCGGTGGACTTGTCAAAGGTCGATTTAACTGGGAAAGCAGACCCTTTCGTGGTCATCAAGTTGAAGAAATCGAACAAAGAATGTAGAACGAGGGTTGTAAACAGAAGCTTGAATCCAGTTTGGAATCAAACATTTGACTTTGTCGTGGAGGACAGTTTGCATGAGATGTTAATCCTTGAAGTATGGGATCATGATACTTTTGGCAAGGAGAAAATTGGAACAGTCTACCTGACACTGACCAAGGTTATTGTAGAAGGGGAGCTTCAAGATAGTTTTCCGCTAGATGGTGCCAAATCTGGAAAAATTCATTTACATCTGAAATGGACAGCACAGCCTAAATTTCGAGAAACTTGA 1260 0.4214 MELEMQWDGNPNITLDIKTLVGVALPVQVKDIAFTGIFRLIFKPLVDEFPTFGAVSCSLRHKKLLDFTLKIGGGDVSTIPGIKDAVEETIRDAIEDSITWPARKIVPILPGDYSDLELKPVGTLEVKLVQAKDLANKDLIGKSDPFAVLFVRPLRDQTKRSKTIKNELNPVWNEHFEFTVEEVSTQHFTVRVFDDEGISSSELIGCAQVQLKDLEPGKVKDVWLNLVKDLEGYREKKYRGQVHLELLYCPYGVKCGLANPFDPDYALTILEKSLNRGTDKVETNQTRNRAILRGVLSVTVISAVDLSKVDLTGKADPFVVIKLKKSNKECRTRVVNRSLNPVWNQTFDFVVEDSLHEMLILEVWDHDTFGKEKIGTVYLTLTKVIVEGELQDSFPLDGAKSGKIHLHLKWTAQPKFRET* 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g02388 419 ProSiteProfiles C2 domain profile. 277 394 IPR000008 -
Pte1g02388 419 Pfam C2 domain 122 226 IPR000008 -
Pte1g02388 419 Pfam C2 domain 294 395 IPR000008 -
Pte1g02388 419 CDD C2 296 396 - -
Pte1g02388 419 Gene3D C2 domain 115 250 IPR035892 -
Pte1g02388 419 Gene3D C2 domain 276 412 IPR035892 -
Pte1g02388 419 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 120 251 IPR035892 -
Pte1g02388 419 CDD C2 124 226 - -
Pte1g02388 419 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 1 109 IPR031468 GO:0008289
Pte1g02388 419 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 1 108 IPR039010 -
Pte1g02388 419 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 291 412 IPR035892 -
Pte1g02388 419 SMART C2_3c 295 393 IPR000008 -
Pte1g02388 419 SMART C2_3c 123 223 IPR000008 -
Pte1g02388 419 FunFam Plant synaptotagmin 117 258 - -
Pte1g02388 419 PRINTS C2 domain signature 337 350 IPR000008 -
Pte1g02388 419 PRINTS C2 domain signature 359 367 IPR000008 -
Pte1g02388 419 PRINTS C2 domain signature 311 323 IPR000008 -
Pte1g02388 419 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 1 410 IPR045050 GO:0008289
Pte1g02388 419 ProSiteProfiles C2 domain profile. 103 224 IPR000008 -
Pte1g02388 419 FunFam Extended synaptotagmin-2 272 414 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g02388 Pte-Chr1 44574170 44576972 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g02388 124 412 Lipid Metabolism Gene Families AT1G51570 24.765 5.72e-10 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g02388 - - gmx:100787972 652.899
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte1g02388 1 44574170 44576972 Pte1g02388 1 44574170 44576972 RCT