Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g00097 ATGGGATTCATCGGCGGCATGATCATTGGCATCGCCATTGGTATTGTATTGATCGTCGCTTTCGCTCGTCACGAGACCGTCCGATCCAAGCGTCGCTCCGATTTGGCGAAGACGATAGCACAATTTGCGAGGATGACAGTGGAGGATTCCAGAAAAATTCTGCCTCCTAAGTTCTATCCATCATGGGTGTTAAATTGGCTTAATGGCCGACTCAGGAAGATATGGCCATATGTTGATGAGGCAGCGTCAGAGTTGATAAGAATCAATGTGGAACCAATTCTTGAACAATATAGGCCGGTTATTTTGTCTTCTCTCACCTTCTCCAAGTTGACCCTTGGCACTGTGGCTCCACAATTTACAGGAGTTACAATTGTTGAAGAGAATAGTGGGTCTGATGGGGTGACAATGGATCTTGAGATGCAATGGGATGGTAACCCGAATATCGTCCTTGACATTAAAACCAGAGTTGGTGTTGTACTTCCTGTACAGGTAAAAAATATTGGATTCACTGGGGTTTTCAGGTTGATCTTCAAGCCACTAGTGAATGAGTTCCCTGCTTTTGGAGCTGTTTGTTTTTCCTTGAAAGAAAAGAAAGATCTGGATTTTACTCTCAAGGTTATTGGTGGTGATTTATCAGCTTTGCCGGGGATATCTGATGCTATAGAGGAAACAATTAGAGATGCCATTGAAGACTCTATAACTTGGCCAGTACGCAAAGTTATACCAATTCTACCAGGGGATTACAGTAATCTAGAGTTGAAACCGGTTGGAATACTAGAAGTAAAATTAGTGCAAGCAAAGAACTTAACAAATAAAGATGTAATTGGGAAATCCGATCCTTATGCTGTCATATTTGTACGCCCCCTTCGTGACAAAATCAAAACCAGTAAAATAATGAACAACCAGTTGAATCCAGTATGGAATGAGCACTTTGAATTCATTATTGAAGATGCGTCAACGCAGCATTTGACCATAAGAATTTTCGATGATGAAGGCATTCAGGCTTCTGAACTTATTGGCTGTGCCCAAGTTTCGCTGAAGGACCTTGAACCTGGTAAAGTCAAGGATGTATGGCTTAAGCTGGTTAAGGATTTGGAGGTCCATAGAGATAACAAATACAGGGGTGAGGTGCACTTGGAGCTCTTGTACTGCCCATTTGGAGTTGAAAGCGCCATTAAGAACCCTTTTGACCCTGATTTCTCATTAACCACGTTCGAGAAGACCCTCAAGAGTGGAACTGGTGATGCAGACGCAGAAGATCCTACAGGGGCACGTAGGAGAAACAACGTGATTGTAAGAGGGGTTCTATCTGTGACAGTGATTTCAGCTGAAGACTTGCCAGTAGTGGACTTAATGGGCAAGGCTGATCCATTTGTTGTCCTTATGTTGAAAAAAACAGAAAAAAAACTCAAGACCAGAGTTGTAAATGAATCCCTAAACCCAGTTTGGAATCAAACATTTGATTTTGTTGTGGAGGATGGCTTACACGAAATGTTAATTCTTGAAGTCTACGATCATGATACGTTTGGCAAGGAAAAAATTGGAAGAGTGATCTTGACACTGACTAAGGTCATCTTAGAAGGGGAATACAATGAAACTTATCCTCTAGACGGAGCTAAATCCGGAAATATTTCTTTGCATTTGAAGTGGACTCCACAGCACAAGTTCCGGGATCCTTAG 1680 0.4208 MGFIGGMIIGIAIGIVLIVAFARHETVRSKRRSDLAKTIAQFARMTVEDSRKILPPKFYPSWVLNWLNGRLRKIWPYVDEAASELIRINVEPILEQYRPVILSSLTFSKLTLGTVAPQFTGVTIVEENSGSDGVTMDLEMQWDGNPNIVLDIKTRVGVVLPVQVKNIGFTGVFRLIFKPLVNEFPAFGAVCFSLKEKKDLDFTLKVIGGDLSALPGISDAIEETIRDAIEDSITWPVRKVIPILPGDYSNLELKPVGILEVKLVQAKNLTNKDVIGKSDPYAVIFVRPLRDKIKTSKIMNNQLNPVWNEHFEFIIEDASTQHLTIRIFDDEGIQASELIGCAQVSLKDLEPGKVKDVWLKLVKDLEVHRDNKYRGEVHLELLYCPFGVESAIKNPFDPDFSLTTFEKTLKSGTGDADAEDPTGARRRNNVIVRGVLSVTVISAEDLPVVDLMGKADPFVVLMLKKTEKKLKTRVVNESLNPVWNQTFDFVVEDGLHEMLILEVYDHDTFGKEKIGRVILTLTKVILEGEYNETYPLDGAKSGNISLHLKWTPQHKFRDP 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g00097 559 FunFam Extended synaptotagmin-2 416 554 - -
Pumo10g00097 559 ProSiteProfiles C2 domain profile. 238 359 IPR000008 -
Pumo10g00097 559 CDD C2 436 536 - -
Pumo10g00097 559 FunFam Plant synaptotagmin 252 394 - -
Pumo10g00097 559 CDD SMP_SYT 60 243 - -
Pumo10g00097 559 SMART C2_3c 435 533 IPR000008 -
Pumo10g00097 559 SMART C2_3c 258 358 IPR000008 -
Pumo10g00097 559 Gene3D C2 domain 431 557 IPR035892 -
Pumo10g00097 559 Gene3D C2 domain 253 392 IPR035892 -
Pumo10g00097 559 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 60 244 IPR031468 GO:0008289
Pumo10g00097 559 PRINTS C2 domain signature 451 463 IPR000008 -
Pumo10g00097 559 PRINTS C2 domain signature 499 507 IPR000008 -
Pumo10g00097 559 PRINTS C2 domain signature 477 490 IPR000008 -
Pumo10g00097 559 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 1 550 IPR045050 GO:0008289
Pumo10g00097 559 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 430 553 IPR035892 -
Pumo10g00097 559 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 255 386 IPR035892 -
Pumo10g00097 559 ProSiteProfiles C2 domain profile. 417 534 IPR000008 -
Pumo10g00097 559 CDD C2 259 361 - -
Pumo10g00097 559 Pfam C2 domain 257 361 IPR000008 -
Pumo10g00097 559 Pfam C2 domain 434 536 IPR000008 -
Pumo10g00097 559 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 65 243 IPR039010 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g00097 Pumo-Chr10 1651431 1663184 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g00097 392 524 Lipid Metabolism Gene Families AT1G51570 30.827 1.84e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g00097 - - gmx:100787972 1021.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g00097 10 1651431 1663184 Pumo10g00097 10 1651431 1663184 ECH