Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g3460 ATGGGATTCATCGGCGGGATGATCATCGGCATCGCCTTCGGCGTTGGATTGATCGTTGCTTTTGCTCGCTACGAAAGCATTCGATCCAAGCGTCGTTCTGATTTGGCGAAGACGGTGGCGATGTTTGCGAGGATGACGGTGGAAGATTCTAGAGTACTTCTGCCTGGAAAGTTCTACCCTTCATGGGTTTTAAAATGGCTCAACACGCAACTCGACAAGATGTGGCCATTCATCAATGATGCAGCTTCGGAGTTGATAAAGAGTAGTGTGGAGCCAATTCTAGAGCAATATAAGCCAGTTATTTTGGCTTCTCTTACCTTCTCCAAGTTGACCCTTGGCACAGTGGCTCCACAATTTACCGGAATTGCCATACTTGAAGAGGAAAGTGGGCCTAATGAATTTACCATAGAGTTAGAGATGCAGTGGGATGGTGACCCCAACATTGTTCTTGATATCAAAACCAAAGTTGGCGTCGTACTTCCCATCCAGGTAAAAAATATTGGATTCACTGGGGTCTTTTGGTTGATATTCAAACCACTAGTGGATGAGTTCCCTACTTTTTCAGCTGTTTCTGTTTCATTGAGAGAAAAGAAAGATCTGGATTTTACTCTAAAAGTAGTCGGCGGTGATATATCAGCTTTACCGGGGGTATCTGATGCTATAGAGGAAACAATTCGGGATGCTATTGAAGACTCTATAACTTGGCCAATGCGCAAAGTCATACCAATTTTACCTGGGGATTACAGTAATCTGGAGTTGAAACCGGTTGGAATATTAGATGTGAAACTGGTGCAAGCAAAGGACTTAACAAATAAGGATATCATTGGTAAATCCGACCCTTTTGCTGTTCTGTTTGTAAGGCCACTTCGTGATAGAACCAAAACAAGCAAAGTAATCAACAATGACTTGAATCCAATATGGAATGAGCACTTTGAGTTCATTGTTGAAGATGCGGATACACAGCACTTGACTGTAAGAGTTTTCGATGATGAAGGCATTTCTGCTGCCGAGCTTATTGGTTGTGCCCAAATGCCTCTAAAGGAACTAGAACCTGGTAAAGTCAAGATTGTGTGGTTGAAACTGGTCAAGGATTTGGAGGTCCATAGGGATAACAAATACAGGGGTGAGGTGCACTTGGAGCTGTTGTACATCCCACATGGAACAGATGACAGCTTTAGGAACCCCTTCGACCCTGATTTCGCATTGACCATATTCGAGAAGACCCTCAAGAGTGGAACTGAACCAGAGGCTGAGGATATTACAGCACGAAAGAAGAACGTCATTGTAAGAGGTGTTCTCTCTGTGACGGTTATTTCAGCTGAAGACTTGCCAGTTGTGGACTTAATGGGCAAGGCTGATCCATTTGTTGTCCTGACGTTGAAGAAATCAGAGAAAAAACTCAAGACTAGGGTCGTAAATGAATCCTTAAATCCAGTTTGGAATCAAACATTTGACTTTGTTGTAGAGGACGGCTTACATGAAATGTTAATTGTTGAAGTCTGGGATCACGATACTTTTGGGAAGGACAAAATGGGAAAAGTGATAATGACTCTAACAAAGGTGATCTTAGAAGGGGAATATCAGGAAACGTATACACTAGAGGGAGCTAAATCTGGAAGGCTTACTTTGCATCTGAGATGGACACCACAGCACAAGTACCGGGATCCTTAG 1671 0.4309 MGFIGGMIIGIAFGVGLIVAFARYESIRSKRRSDLAKTVAMFARMTVEDSRVLLPGKFYPSWVLKWLNTQLDKMWPFINDAASELIKSSVEPILEQYKPVILASLTFSKLTLGTVAPQFTGIAILEEESGPNEFTIELEMQWDGDPNIVLDIKTKVGVVLPIQVKNIGFTGVFWLIFKPLVDEFPTFSAVSVSLREKKDLDFTLKVVGGDISALPGVSDAIEETIRDAIEDSITWPMRKVIPILPGDYSNLELKPVGILDVKLVQAKDLTNKDIIGKSDPFAVLFVRPLRDRTKTSKVINNDLNPIWNEHFEFIVEDADTQHLTVRVFDDEGISAAELIGCAQMPLKELEPGKVKIVWLKLVKDLEVHRDNKYRGEVHLELLYIPHGTDDSFRNPFDPDFALTIFEKTLKSGTEPEAEDITARKKNVIVRGVLSVTVISAEDLPVVDLMGKADPFVVLTLKKSEKKLKTRVVNESLNPVWNQTFDFVVEDGLHEMLIVEVWDHDTFGKDKMGKVIMTLTKVILEGEYQETYTLEGAKSGRLTLHLRWTPQHKYRDP* 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g3460 556 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 1 555 IPR045050 GO:0008289
Amo18g3460 556 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 255 386 IPR035892 -
Amo18g3460 556 SMART C2_3c 432 530 IPR000008 -
Amo18g3460 556 SMART C2_3c 258 358 IPR000008 -
Amo18g3460 556 ProSiteProfiles C2 domain profile. 236 359 IPR000008 -
Amo18g3460 556 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 60 244 IPR031468 GO:0008289
Amo18g3460 556 CDD C2 433 533 - -
Amo18g3460 556 ProSiteProfiles C2 domain profile. 414 531 IPR000008 -
Amo18g3460 556 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 65 243 IPR039010 -
Amo18g3460 556 PRINTS C2 domain signature 448 460 IPR000008 -
Amo18g3460 556 PRINTS C2 domain signature 474 487 IPR000008 -
Amo18g3460 556 PRINTS C2 domain signature 496 504 IPR000008 -
Amo18g3460 556 PANTHER SYNAPTOTAGMIN-4 1 555 - -
Amo18g3460 556 Pfam C2 domain 257 361 IPR000008 -
Amo18g3460 556 Pfam C2 domain 431 532 IPR000008 -
Amo18g3460 556 Gene3D C2 domain 428 554 IPR035892 -
Amo18g3460 556 Gene3D C2 domain 253 391 IPR035892 -
Amo18g3460 556 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 427 550 IPR035892 -
Amo18g3460 556 CDD C2 259 361 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g3460 Amo-Chr18 137706922 137713952 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g3460 249 548 Lipid Metabolism Gene Families AT1G51570 23.565 4.53e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g3460 - - gmx:100787972 916.376
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g3460 18 137706922 137713952 Amo18g3460 18 137706922 137713952 ECH
Amo08g2138 08 34251898 34259042 Amo18g3460 18 137706922 137713952 hybridization