Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0569 ATGGAGGAAGAAGAAATAGAGAAGGCAGTGATAGCGTACCTGAAGAAGAAGGGGTTCAAGCAAACAGAGCTAGCTTTTCAAGAGGAGCATCATCAGCATCAAAATCAACAAACCAAGAACTCATCTTCCTCTATCTCATCCTCCACCGACCCTGATATCGCCAAGCACATTCTCTCCTTCTCCGAGTCAGAGAATATTCCAGCAAGATACCATGAGGGATATAGCAAATTAAGATCGTGGACTTATAGTTCACTAGATTTGTACAAGCATGAGTTGCTTCGAGTGCTTTATCCAGTATTTATACACTGTTTTATGGATCTTGTGGCAAAAGGGCATATTCAAGAAGCTAGGAACTTTTTCAATAGCTTTCGTGAAGACCATGAAATGATGCATTTAAGGGACCTTCAAAAGTTGGAAGGAGTTCTTTCTCCTTCACATCTGGAGGAAATGGAATTTGCTCATTCTCTGAGGCAAAGCAAAGTCAGCATAAAGATATGCCAGTACTCTTATGAGCTTTTGCTGCAATATCTACATAAGACACAATCCATCACCATGCTTGGGGTTATCAATGAGCATATTAACTTCCAAGTTTCTCCCGGACAGCCCGCCTCAATTTCTGATGACGCTGAGGTTGTGACACTTATTGGCAGCAGCCAAGATGATGCTAATCAGATCAATCAGAAAGAAATACATTGGGGGTTGCTTGAAGGGTCTTTAGAAGAACGGTTGGAGAAAGCAGGGGGTTTGCTTTCAGATTCTGAAAAAGCAGAAGGAGAAGTGAAAGAGACAGACACAGAAGAGAATAAGAAAAGATCAGCAGAAGGAGGAAAACAAGGTTCTTCAATAAAAAAGTTGAAAAAGGACAAGGTTGTTGGTGCAGCAGGAAAAACTGCGCGCCCCGAGGCTAATGCAGTATCCATGGCACCACGAGTCAAACCGGAGCTTGCTTTGCCCGTAATGCCAACAGAGGTAGAGCAGTCTATTCTTGAAGACCTGCGAAACCGTGTACAGTTGAGTAGCATGGCACTGCCATCAGTCAGCTTCTATACGTTTATCAATACACACAATAGTTTAAACTGTTCATCAATATCCCATGATGGATCTTTGGTTGCTGGTGGATTCTCAGACTCATCATTGAAGGTTTGGGACATGTCAAAGCTTGGGCAGCAAGCTGCTACTTCTATTATGCAGGGCGACAATGATTTGGCTCCTACCGAACAAATTCTTGGAACAAGTGGTGGAAAAAGATCTTATACATTATTTCAGGGTCATTCGGGTCCTGTTTATTCAGCCACTTTTAGTCCTCTTGGGGATTTTATTCTTTCCTCCTCAGCAGACTCAACAATTCGATTGTGGAGCACAAAACTAAATGCAAATCTTGTTTGCTACAAAGGTCACAACTACCCTGTTTGGGATGTTCAGTTTAGTCCTATGGGACACTATTTTGCCAGCTCTTCGCATGATCGAACAGCCAGGATTTGGTCTATGGACAGGATACAACCCTTAAGAATAATGGCAGGGCATTTGTCTGATGTTGATTGTGTACAGTGGCACATAAACTGCAACTACATTGCGACAGGCTCAAGTGACAAAACAGTTCGATTATGGGATGTACAGAGTGGGGAGTGTGTTCGCATTTTCATTGGCCACAGGAGCATGGTTCTATCTTTGGCAATGTCACCTGATGGTCAGTACATGGCATCCGGTGATGAAGACGGCACGATCATGATGTGGGATCTCTCAAGCGGTCGCTGTGTCATGCCTTTGATGGGTCATATGTCATGCGTATGGTCACTTGCTTTCAGTTGTGAAGGCTCGCTCCTCGCATCTGGGTCTGCTGATTCCACTGTAAAACTGTGGGATGTGACCACAAGCACAAAGGTGCCTAGAAGTGAAGAAAACAAAAGTGGAAACACCAGCAGGCTGAGATCATTGAAGACTTTGCCAACCAAGTCTACACCAGTGTACTCGTTGCGGTTCTCCCGGAGGAATCTTCTATTTGCAGCCGGGGCGCTCTCAAAAAGTGGGTAA 2031 0.4407 MEEEEIEKAVIAYLKKKGFKQTELAFQEEHHQHQNQQTKNSSSSISSSTDPDIAKHILSFSESENIPARYHEGYSKLRSWTYSSLDLYKHELLRVLYPVFIHCFMDLVAKGHIQEARNFFNSFREDHEMMHLRDLQKLEGVLSPSHLEEMEFAHSLRQSKVSIKICQYSYELLLQYLHKTQSITMLGVINEHINFQVSPGQPASISDDAEVVTLIGSSQDDANQINQKEIHWGLLEGSLEERLEKAGGLLSDSEKAEGEVKETDTEENKKRSAEGGKQGSSIKKLKKDKVVGAAGKTARPEANAVSMAPRVKPELALPVMPTEVEQSILEDLRNRVQLSSMALPSVSFYTFINTHNSLNCSSISHDGSLVAGGFSDSSLKVWDMSKLGQQAATSIMQGDNDLAPTEQILGTSGGKRSYTLFQGHSGPVYSATFSPLGDFILSSSADSTIRLWSTKLNANLVCYKGHNYPVWDVQFSPMGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVQWHINCNYIATGSSDKTVRLWDVQSGECVRIFIGHRSMVLSLAMSPDGQYMASGDEDGTIMMWDLSSGRCVMPLMGHMSCVWSLAFSCEGSLLASGSADSTVKLWDVTTSTKVPRSEENKSGNTSRLRSLKTLPTKSTPVYSLRFSRRNLLFAAGALSKSG* 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0569 676 Gene3D - 501 581 IPR015943 GO:0005515
Vvi4g0569 676 SUPERFAMILY WD40 repeat-like 344 672 IPR036322 GO:0005515
Vvi4g0569 676 ProSitePatterns Trp-Asp (WD) repeats signature. 370 384 IPR019775 -
Vvi4g0569 676 SUPERFAMILY Taf5 N-terminal domain-like 56 198 IPR037264 -
Vvi4g0569 676 MobiDBLite consensus disorder prediction 247 294 - -
Vvi4g0569 676 Pfam WD domain, G-beta repeat 353 383 IPR001680 GO:0005515
Vvi4g0569 676 Pfam WD domain, G-beta repeat 421 453 IPR001680 GO:0005515
Vvi4g0569 676 Pfam WD domain, G-beta repeat 460 495 IPR001680 GO:0005515
Vvi4g0569 676 Pfam WD domain, G-beta repeat 500 537 IPR001680 GO:0005515
Vvi4g0569 676 Pfam WD domain, G-beta repeat 583 621 IPR001680 GO:0005515
Vvi4g0569 676 Pfam WD domain, G-beta repeat 541 579 IPR001680 GO:0005515
Vvi4g0569 676 ProSitePatterns Trp-Asp (WD) repeats signature. 608 622 IPR019775 -
Vvi4g0569 676 ProSiteProfiles Trp-Asp (WD) repeats profile. 547 588 IPR001680 GO:0005515
Vvi4g0569 676 ProSiteProfiles Trp-Asp (WD) repeats profile. 421 453 IPR001680 GO:0005515
Vvi4g0569 676 ProSiteProfiles Trp-Asp (WD) repeats profile. 505 546 IPR001680 GO:0005515
Vvi4g0569 676 ProSitePatterns Trp-Asp (WD) repeats signature. 566 580 IPR019775 -
Vvi4g0569 676 ProSiteProfiles LIS1 homology (LisH) motif profile. 2 34 IPR006594 GO:0005515
Vvi4g0569 676 Gene3D - 582 675 IPR015943 GO:0005515
Vvi4g0569 676 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 589 624 - -
Vvi4g0569 676 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID 2 671 - -
Vvi4g0569 676 ProSitePatterns Trp-Asp (WD) repeats signature. 524 538 IPR019775 -
Vvi4g0569 676 MobiDBLite consensus disorder prediction 247 298 - -
Vvi4g0569 676 ProSiteProfiles Trp-Asp (WD) repeats profile. 351 385 IPR001680 GO:0005515
Vvi4g0569 676 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 505 542 - -
Vvi4g0569 676 SMART WD40_4 540 579 IPR001680 GO:0005515
Vvi4g0569 676 SMART WD40_4 582 621 IPR001680 GO:0005515
Vvi4g0569 676 SMART WD40_4 413 453 IPR001680 GO:0005515
Vvi4g0569 676 SMART WD40_4 344 383 IPR001680 GO:0005515
Vvi4g0569 676 SMART WD40_4 456 495 IPR001680 GO:0005515
Vvi4g0569 676 SMART WD40_4 498 537 IPR001680 GO:0005515
Vvi4g0569 676 CDD WD40 421 671 - -
Vvi4g0569 676 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 463 497 - -
Vvi4g0569 676 PRINTS G protein beta WD-40 repeat signature 440 454 IPR020472 -
Vvi4g0569 676 PRINTS G protein beta WD-40 repeat signature 524 538 IPR020472 -
Vvi4g0569 676 PRINTS G protein beta WD-40 repeat signature 608 622 IPR020472 -
Vvi4g0569 676 Gene3D - 217 500 IPR015943 GO:0005515
Vvi4g0569 676 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 547 584 - -
Vvi4g0569 676 ProSiteProfiles Trp-Asp (WD) repeats profile. 589 630 IPR001680 GO:0005515
Vvi4g0569 676 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 421 453 - -
Vvi4g0569 676 MobiDBLite consensus disorder prediction 25 50 - -
Vvi4g0569 676 Pfam WD40 associated region in TFIID subunit, NTD2 domain 65 193 IPR007582 -
Vvi4g0569 676 ProSiteProfiles Trp-Asp (WD) repeats profile. 463 504 IPR001680 GO:0005515
Vvi4g0569 676 Gene3D TFIID subunit TAF5, NTD2 domain 49 198 IPR037264 -
Vvi4g0569 676 CDD TAF5_NTD2 67 199 IPR007582 -
Vvi4g0569 676 MobiDBLite consensus disorder prediction 36 50 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0569 362 631 Miscellaneous Gene Families AT5G08390 24.820 1.91e-19 91.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0569 K03130 - vvi:100254222 1309.28