Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu08g02558 ATGGGATTCTTCGGCGGGATGTTCATCGGCATCGCCTTCGGCGTTGGATTGATCGTTGCTTTTGCTCGCTACGAAAGCATTCGATCCAAGCGTCGTTCTGATTTGGCGAAGACGGTGGCGATGTTCGCGAGGATGACGGTGGAAGATTCTAGAGTACTTCTGCCTGGAAAGTTCTACCCTTCATGGGTTGTATTCACTAAGAGACAGAAGTTAAGTTTCAAGTTTCAACTCTCTTCGGAGTTGATAAAGAGTAGTGTGGAGCCAATTCTAGAGCAATATAAGCCAGTTATTTTGGCTTCTCTTACCTTCTCCAAGTTGACCCTTGGCACAGTGGCTCCACAATTTACCGGAATTGCCATACTTGAAGAGGAAAGTGGGCCTAATGAATTTACCATAGAGTTAGAGATGCAGTGGGATGGTGACCCCAACATTGTTCTTGATATCAAAACCAAAGTTGGCGTCGTACTTCCCATCCAGGTAAAAAATATTGGATTCACTGGGGTTTTTTGGTTGATATTCAAACCACTAGTGGATGAGTTCCCTACTTTTTCAGCTGTTTCTGTTTCATTGAGAGAAAAGAAAGATCTGGATTTTACTCTAAAAGTAGTCGGCGGTGATATATCAGCTTTACCGGGGGTATCTGATGCTATAGAGGAAACAATTCGTGATGCTATTGAAGACTCTATAACTTGGCCAATGCGCAAAGTCATACCAATTTTACCTGGGGATTACAGTAATCTGGAGTTGAAACCGGTTGGAATATTAGATGTGAAACTGGTGCAAGCAAAGGACTTAACAAATAAGGATATCATTGGTAAATCCGACCCTTTTGCTGTCCTGTTTGTAAGGCCACTTCGTGATAGAACCAAAACAAGCAAAGTAATCAACAATGACTTGAATCCAATATGGAATGAGCACTTTGAGTTCATTGTTGAAGATGCGGATACACAGCACTTGACTGTAAGAGTTTTCGATGATGAAGGCATTTCTGCTGCCGAGCTTATTGGTTGTGCCCAAATGCCTCTAAAGGAACTAGAACCTGGTAAAGTCAAGATTGTGTGGTTGAAACTGGTCAAGGATTTGGAGGTCCATAGGGATAACAAATACAGGGGTGAGGTGCACTTGGAGCTGTTGTACATTCCACATGGAACAGATGACAGCTTTAGGAACCCCTTCGACCCTGATTTCGCATTGACCATATTCGAGAAGACCCTCAAGAGTGGAACTGAACCAGAGGCTGAGGATATTACAGCACGAAAGAAGAACGTCATTGTAAGAGGTGTTCTCTCTGTGACGGTTATTTCAGCTGAAGACTTGCCAGTTGTGGACTTAATGGGCAAGGCTGATCCATTTGTTGTCCTGACGTTGAAGAAATCAGAGAAAAAACTCAAGACTAGGGTCGTAAACGAATCCTTAAATCCAGTCTGGAATCAAACATTTGACTTTGTTGTAGAGGACGGCTTACATGAAATGTTAATTGTTGAAGTCTGGGATCACGATACTTTTGGGAAGGACAAAATGGGAAAAGTGATAATGACTCTAACAAAGGTGATCTTAGAAGGGGAATATCAGGAAACGTATACACTAGAGGGAGCTAAATCTGGAAGGCTTACTTTGCATCTGAGATGGACTCCACAGCACAAGTACCGGGATCCTTAG 1659 0.4286 MGFFGGMFIGIAFGVGLIVAFARYESIRSKRRSDLAKTVAMFARMTVEDSRVLLPGKFYPSWVVFTKRQKLSFKFQLSSELIKSSVEPILEQYKPVILASLTFSKLTLGTVAPQFTGIAILEEESGPNEFTIELEMQWDGDPNIVLDIKTKVGVVLPIQVKNIGFTGVFWLIFKPLVDEFPTFSAVSVSLREKKDLDFTLKVVGGDISALPGVSDAIEETIRDAIEDSITWPMRKVIPILPGDYSNLELKPVGILDVKLVQAKDLTNKDIIGKSDPFAVLFVRPLRDRTKTSKVINNDLNPIWNEHFEFIVEDADTQHLTVRVFDDEGISAAELIGCAQMPLKELEPGKVKIVWLKLVKDLEVHRDNKYRGEVHLELLYIPHGTDDSFRNPFDPDFALTIFEKTLKSGTEPEAEDITARKKNVIVRGVLSVTVISAEDLPVVDLMGKADPFVVLTLKKSEKKLKTRVVNESLNPVWNQTFDFVVEDGLHEMLIVEVWDHDTFGKDKMGKVIMTLTKVILEGEYQETYTLEGAKSGRLTLHLRWTPQHKYRDP 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu08g02558 552 ProSiteProfiles C2 domain profile. 410 527 IPR000008 -
Adu08g02558 552 Pfam C2 domain 427 528 IPR000008 -
Adu08g02558 552 Pfam C2 domain 253 357 IPR000008 -
Adu08g02558 552 CDD C2 429 529 - -
Adu08g02558 552 PRINTS C2 domain signature 492 500 IPR000008 -
Adu08g02558 552 PRINTS C2 domain signature 444 456 IPR000008 -
Adu08g02558 552 PRINTS C2 domain signature 470 483 IPR000008 -
Adu08g02558 552 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 1 551 IPR045050 GO:0008289
Adu08g02558 552 ProSiteProfiles C2 domain profile. 232 355 IPR000008 -
Adu08g02558 552 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 62 239 IPR039010 -
Adu08g02558 552 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 56 240 IPR031468 GO:0008289
Adu08g02558 552 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 251 382 IPR035892 -
Adu08g02558 552 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 423 546 IPR035892 -
Adu08g02558 552 SMART C2_3c 428 526 IPR000008 -
Adu08g02558 552 SMART C2_3c 254 354 IPR000008 -
Adu08g02558 552 Gene3D C2 domain 249 387 IPR035892 -
Adu08g02558 552 Gene3D C2 domain 424 550 IPR035892 -
Adu08g02558 552 PANTHER SYNAPTOTAGMIN-4 1 551 - -
Adu08g02558 552 CDD C2 255 357 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu08g02558 Adu-Chr8 41655956 41662952 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu08g02558 245 544 Lipid Metabolism Gene Families AT1G51570 23.565 4.18e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu08g02558 - - gmx:100787972 897.886
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu08g02558 08 41655956 41662952 Adu08g02558 08 41655956 41662952 ECH