Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g02939 ATGGGATTCATCAGCGGCATGATCGTTGGTATCGCCGTTGGTATTGTATTGATCGTTGCTTTTGCTCGTCAAGAAAGCATCCGATCCAATCGTCGCTCCAATCTAGCGAAGACGATAGCACAGTTTGCGAGGATGACGGTGGAAGATTCTAGAAAACTTCTACCTCCAAAGTTCTATCCGTCATGGGTGGTCTTCACTAAGAGGCAGAATTCAATTTTGATATGGATTCTGATATTAATTTGTTCATTAATGCAGTTAAATTGGCTTAATATGGAGTTAGAAAAGATATGGCCGTTCGTTGATGAGGCAGCGTCTGAATTGATAAAAAGCAACGTTGAACCAATTCTTGAACAATATAGGCCAGTGATTTTGTCTTCTCTCACATTTTCTAAGTTGACGCTTGGCACCGTTGCTCCACAATTTACAGGAATTTCAATTGTTGAAGAGGATAGTGGGCCTAATGGAGTGACAATGGAGTTTGACATGCAGTGGGATGGTAATCCCAATATTGTTCTTGACATTAAAACCAAAGTTGGTGTTGTACTGCCTGTGCAGGTAAAAAATATTGGATTCACTGGGGTTTTCAGGTTGATCTTCAAACCTCTTGTAAACGAGTTCCCTGCTTTTGGAGCCGTTTGTTTTTCTCTGAGAGAAAAGAAAGCTCTGGATTTTACTCTTAAGGTCGTTGGGGGTGATATATCATCTTTACCAGGAATATCTGATGCTATAGAGGAAACAATTCGAGATGCCATTGAAGACTCTATAACTTGGCCAGTACGCAAAATTATACCAATTATACCTGGCGATTACAGTAACCTAGAATTGAAACCAGTTGGAACACTAGATGTAAAACTAGTGCAAGCAAAGAACTTGGCAAACAAAGATCTGATTGGGAAATCTGATCCTTATGCTGTCATATTTGTACGCCCGCTTCGTGACAAAACCAAAACCAGTAGAACAATTAACAACCAGTTGAACCCAATATGGAATGAGCACTTTGAGTTCATTATTGAAGATACATCAACACAGCACTTGACCATAAGAATCTTCGACGACGAAGGCATTCAGGCAGCTGAGCTTATTGGCTGTGCCCAAGTTTCCTTGAAGGATCTCGAACCTGGTAAAGTCAAGGATGTGTGGTTGAAATTGGTTAAGGATTTGGAGGTTCATAGGGATAATAAAGTCAGGGGTGAGGTCCACTTGGAGCTCTTGTACTGCCCATATGGAGTTGATAACAGCTTGAAGAGCCCTTTTGACGCTGACTACTCATTAACCACGTTTGAGAAGACCCTTAAGAATGGAGCTAGTGACGCAGAGGATGAGGATCTTTCAAAATCATCACGGGCGAGGAAAAGCAACGTCATAGTAAGAGGAGTTCTATCTGTCACAGTAATTTCAGCTGAAGATTTGCCTGTAGTGGACTTATTGGGCAAGGCTGACCCATTTGTTGTCCTTGGGTTGAAAAAATCAGAAAAAAAACTCAAGACCAGAGTTGTAAATGAAACCCTAAACCCAGTATGGAATCAAACATTTGACTTTGTTGTGGAGGACGGCTTACATGACATGTTAATTGTTGAACTATGGGATCATGATACCTTTGGCAAGGAAAAAATGGGAAAAGTTATAATGACACTAACCAAGGTCATCTTAGAAGGGGAATACAATGAAACGTTTCTTCTGGATGATGCTAAATCTGGAAAGGTTAGTTTGCATTTGAGGTGGACTCCGCAGCATAAGTACCGCGATCCTTAG 1752 0.4104 MGFISGMIVGIAVGIVLIVAFARQESIRSNRRSNLAKTIAQFARMTVEDSRKLLPPKFYPSWVVFTKRQNSILIWILILICSLMQLNWLNMELEKIWPFVDEAASELIKSNVEPILEQYRPVILSSLTFSKLTLGTVAPQFTGISIVEEDSGPNGVTMEFDMQWDGNPNIVLDIKTKVGVVLPVQVKNIGFTGVFRLIFKPLVNEFPAFGAVCFSLREKKALDFTLKVVGGDISSLPGISDAIEETIRDAIEDSITWPVRKIIPIIPGDYSNLELKPVGTLDVKLVQAKNLANKDLIGKSDPYAVIFVRPLRDKTKTSRTINNQLNPIWNEHFEFIIEDTSTQHLTIRIFDDEGIQAAELIGCAQVSLKDLEPGKVKDVWLKLVKDLEVHRDNKVRGEVHLELLYCPYGVDNSLKSPFDADYSLTTFEKTLKNGASDAEDEDLSKSSRARKSNVIVRGVLSVTVISAEDLPVVDLLGKADPFVVLGLKKSEKKLKTRVVNETLNPVWNQTFDFVVEDGLHDMLIVELWDHDTFGKEKMGKVIMTLTKVILEGEYNETFLLDDAKSGKVSLHLRWTPQHKYRDP 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g02939 583 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 277 408 IPR035892 -
Car05g02939 583 PRINTS C2 domain signature 475 487 IPR000008 -
Car05g02939 583 PRINTS C2 domain signature 501 514 IPR000008 -
Car05g02939 583 PRINTS C2 domain signature 523 531 IPR000008 -
Car05g02939 583 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 457 576 IPR035892 -
Car05g02939 583 Gene3D C2 domain 455 581 IPR035892 -
Car05g02939 583 Gene3D C2 domain 271 407 IPR035892 -
Car05g02939 583 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 87 265 IPR039010 -
Car05g02939 583 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 1 582 IPR045050 GO:0008289
Car05g02939 583 ProSiteProfiles C2 domain profile. 439 558 IPR000008 -
Car05g02939 583 SMART C2_3c 280 380 IPR000008 -
Car05g02939 583 SMART C2_3c 459 557 IPR000008 -
Car05g02939 583 CDD C2 281 383 - -
Car05g02939 583 Pfam C2 domain 458 558 IPR000008 -
Car05g02939 583 Pfam C2 domain 279 383 IPR000008 -
Car05g02939 583 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 82 266 IPR031468 GO:0008289
Car05g02939 583 PANTHER SYNAPTOTAGMIN-4 1 582 - -
Car05g02939 583 ProSiteProfiles C2 domain profile. 260 381 IPR000008 -
Car05g02939 583 CDD C2 460 556 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g02939 Car-Chr5 74362340 74368141 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g02939 281 574 Lipid Metabolism Gene Families AT4G00700 22.930 1.55e-12 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g02939 - - gmx:100787972 959.903
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g02939 05 74362340 74368141 Car05g02939 05 74362340 74368141 ECH