Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g01405 ATGGGATTCATCAGTGGCATGATCATTGGCATTGCAATCGGTATCCTATTGATCATCGCTTTCGCTCGTCAAGAAAGCACTCGATCCAAGCGTCGCACTGATTTGGCAAACACGATAGCAAGGTTTGCAAGGATGACGGTGGAAGATTCTAGAAAACTTTTGCCTCCAAATTTCTATCCATCATGGGTGGTTTTTACTCGGAGACAAAAGTTAAGTTTAAATTTCTCATAGAATCATCAAATTCAAATTTTGTAAGGTTTTCTAATATTGATTTGTTTGTTAATGCAGTTGAATTGGCTTAATGTTCAACTACAAAAGATTTGGCCATTCGTTGATGAGGCAGCGTCAGAATTGATAAGAAACAATGTTGAACCCATTCTTGAACAATATCGGCCATTGATTTTGTCATCTCTCACATTTTCCAAGTTGACTCTTGGGAATGTAGCTCCACAATTTACAGGGATTTCAATTATTGAAGAGGATAGTGGTCCTAATGGCATCACAATGGAGTTTGAAATGCAATGGGATGGTACCCCAAATATTGTTCTTGACATTAAAACTAAAGTTGGTGTTGTACTTCCTGTGCAGGTAAAAAATATTGGATTCACTGGGGTTTTCAGGTTGATCTTCAAACCTCTAGTAAATGAATTCCCTGCTTTTGGAGCTGTTTGTTTTTCTTTAAGAGAAAAGAAAGCTTTGGATTTTACTCTTAAGGTGGTTGGTGGTGACATTTCGTCTTTACCGGGGATATCTGATGCTATAGAGGAAACAATTAGAGATGCCATTGAAGACTCTATAACTTGGCCAGTACGCAAAATTATACCAATTATACCAGGAGATTACAGTAACCTAGAATTGAAACCAGTTGGAACACTAGATGTAAAGTTAGTGCAAGCAAAGAACTTGGCAAATAAAGATCTTATTGGAAAATCTGATCCTTATGCTGTTGTATTTGTACGCCCACTTCGCGACAAAACCAAAACCAGTAAAACAATAAGTAACCAGTTGAACCCAATATGGAATGAGAACTTTGAATTTGTTATTGAAGATGTATCTACACAACACTTGACCATAAGAATCTTTGACGATGAAGGGATTCAAGCAGCAGAACTTATTGGTTGTGCCCAAGTTTCCTTAAAGGACCTTGAACCTGGTAAAGTCAAAGATGTATGGTTGAAACTAGTTAAGGATTTAGAAATCCAGAGAGATAACAAATACAGGGGTGAGGTGCACTTGGAGCTCTTGTACTGTCCACATGGAGTTGAGAACACTTTTAAAAGCCCTTTTTTCTCTGATTATACTTTAACCACATTTGAGAAGACTCTCAAGAGCGGATCTAATGACTTAGAGGATGATGATATTTCAATATCATCATCACGGTCATCGTCAAGACCATCGTCACGACCATCATCACGATCTTCATCGCGAAGGAGAAACAGTGTGATTGTAAGAGGAGTTTTATCCGTCACAGTAATTTCAGCTGAAGATTTGCCAGTAGTGGATTTCATGGGCAAGGCTGATCCATTTGTTGTCCTTTCATTGAAAAAATCAGAAAAGAAAGTCAAAACTAGAGTTGTTAACGAAACCTTAAATCCAGTATGGAATCAAACATTTGACTTTGTTGTGGAGGATGGTTTACACGACATGTTAATTGTTGAACTTTGGGATCATGATACCTTTGGCAAGGAAAAAATGGGGAAAGTGATCATGACACTAACAAAGGTGATCTTAGAAGGGGAATACCACGAAACATTTATTTTGGATGATGCCAAATCTGGAAAGATTAATTTGCATTTAAGGTGGACTGCACAACACAAGTATCGGGAGCCTTAA 1833 0.3786 MGFISGMIIGIAIGILLIIAFARQESTRSKRRTDLANTIARFARMTVEDSRKLLPPNFYPSWVVFTRRQKLSLNFSXNHQIQILXGFLILICLLMQLNWLNVQLQKIWPFVDEAASELIRNNVEPILEQYRPLILSSLTFSKLTLGNVAPQFTGISIIEEDSGPNGITMEFEMQWDGTPNIVLDIKTKVGVVLPVQVKNIGFTGVFRLIFKPLVNEFPAFGAVCFSLREKKALDFTLKVVGGDISSLPGISDAIEETIRDAIEDSITWPVRKIIPIIPGDYSNLELKPVGTLDVKLVQAKNLANKDLIGKSDPYAVVFVRPLRDKTKTSKTISNQLNPIWNENFEFVIEDVSTQHLTIRIFDDEGIQAAELIGCAQVSLKDLEPGKVKDVWLKLVKDLEIQRDNKYRGEVHLELLYCPHGVENTFKSPFFSDYTLTTFEKTLKSGSNDLEDDDISISSSRSSSRPSSRPSSRSSSRRRNSVIVRGVLSVTVISAEDLPVVDFMGKADPFVVLSLKKSEKKVKTRVVNETLNPVWNQTFDFVVEDGLHDMLIVELWDHDTFGKEKMGKVIMTLTKVILEGEYHETFILDDAKSGKINLHLRWTAQHKYREP 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g01405 610 CDD C2 487 583 - -
Vivi3g01405 610 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 98 276 IPR039010 -
Vivi3g01405 610 CDD C2 292 394 - -
Vivi3g01405 610 ProSiteProfiles C2 domain profile. 271 392 IPR000008 -
Vivi3g01405 610 SMART C2_3c 486 584 IPR000008 -
Vivi3g01405 610 SMART C2_3c 291 391 IPR000008 -
Vivi3g01405 610 FunFam Extended synaptotagmin-2 465 605 - -
Vivi3g01405 610 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 1 601 IPR045050 GO:0008289
Vivi3g01405 610 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 480 602 IPR035892 -
Vivi3g01405 610 FunFam Plant synaptotagmin 285 427 - -
Vivi3g01405 610 MobiDBLite consensus disorder prediction 449 475 - -
Vivi3g01405 610 MobiDBLite consensus disorder prediction 458 475 - -
Vivi3g01405 610 Pfam C2 domain 485 583 IPR000008 -
Vivi3g01405 610 Pfam C2 domain 290 394 IPR000008 -
Vivi3g01405 610 CDD SMP_SYT 98 276 - -
Vivi3g01405 610 ProSiteProfiles C2 domain profile. 467 585 IPR000008 -
Vivi3g01405 610 Gene3D C2 domain 286 424 IPR035892 -
Vivi3g01405 610 Gene3D C2 domain 470 604 IPR035892 -
Vivi3g01405 610 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 93 277 IPR031468 GO:0008289
Vivi3g01405 610 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 288 419 IPR035892 -
Vivi3g01405 610 PRINTS C2 domain signature 528 541 IPR000008 -
Vivi3g01405 610 PRINTS C2 domain signature 502 514 IPR000008 -
Vivi3g01405 610 PRINTS C2 domain signature 550 558 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g01405 Vivi-Chr3 22914377 22918137 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g01405 292 603 Lipid Metabolism Gene Families AT4G00700 23.512 4.13e-11 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g01405 - - vvo:131655148 1115.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g01405 3 22914377 22918137 Vivi3g01405 3 22914377 22918137 ECH