Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g0871 ATGGGATTCATCAGCGGCATGATCGTTGGCTTCGCCGTCGGTGTCGGATTGATCGTCGCTCTTGCTCGCTACGGAAGCATCCGATCCAAGCGTCGCTCCGATATGGCGAAGACGATCGCTGCATTTGCGAGGATGACGGTGGAAGATTCTAGAAAACTTCTGCCTCCAAATTTCTACCCGTCATGGGTTTTAAAATGGCTTAACAGCCAGCTCGACAAGATTTGGCCATACGTTAACGAGGCAGCTTCAGAGTTGATAAAGAGCAATGTGGAACCCATTCTTGAACAATATAAGCCAAGTATTTTGTCTGCTCTTACATTCTCCAAGTTGACCCTTGGCACTGTGGCTCCACAATTCACAGGAATTGCAATTGTTGAAGAGGACAGTGGACCTAATGAAGTGACTATGGAGTTAGAGATGCAGTGGGATGGTAACCCTAATATCGTTCTTGACATTAAAACCAGAGTCGGTGTTGTACTTCCTGTGCAGGTAAAAAATATTGGCTTCACGGGGGTTTTCAGGTTGATCTTCAAACCATTAGTACATGAGTTCCCTGGCTTTGGAGCTGTTTGTTTTTCCTTGAGAGAAAAGAAAGATCTGGACTTTACTCTAAAGGTTGTTGGTGGTGATATATCATCTATACCGGGGATATCTGATGCTATAGAGGAAACAATTCGAGACGCTATTGAAGACTCTATAACTTGGCCAGTACGCAAAATCATACCAATCATAGCAGGGGATTACAGTAACCTGGAGTTGAAACCGGTTGGAATGCTTGATGTAAAACTAGTGCAAGCAAAGGAATTAGCAAATAAAGATTTGATTGGGAAATCCGATCCTTATGCCGTCATATTTGTACGCCCGCTTCGTGACAGAACCAAAACCAGCAAAACAATCAACAACAACTTGAATCCAGTGTGGAATGAACACTTTGAGTTCGTTGTTGAAGATTTGTCTACGCAACACTTGACTGTGAGAATTTTCGATGATGAAGGCATCCAGGCTTCTGAGCTTATTGGCTGTGCACAAGTGCCTCTAAAGGACCTTGAACCTGGTAAAGTCAAGGTTGTATGGTTGAAACTGGTTAAGGATTTGGAGGTCCAGAGAGATAACAAACCCAGGGGTGAGGTGCACTTGGAGCTCTTGTACGTCCCATTTGGAGCAGATAACACTTTTAAGAACCCTTTTGACCCTGATTTCTCATTAACCACATTCGAGAAGACTCTCAAGAGTATAGCTTGTGAGGCAGAGGCTGGGGATCTTTCAAGATCACCATCATCACGGAAGAAAAACGTGATTGTAAGAGGGGTTCTTTCTGTGACGGTGATTTCAGCTGAAGACTTGCCAGTGGCGGACTTAATGGGCAAGGCTGACCCATTTGTTGTCCTTACGTTGAAAAAATCAGGGAAAAAACTCAAGACTAGGGTGGTAAATGAGTCCCTAAACCCAGTTTGGAATCAAACATTTGACTTTGTTGTGGAGGATGGCTTACATGAAATGTTAGTTGTTGAAGTCTGGGATCATGATACGTTTGGAAAGGAAAAATTTGGAAAAGTGATTATGACTCTGACTAAGGTCATCTTAGAAGGGGAGTATCAGGAAACATATCCACTCGAAGGAGCTAAATCTGGAAGGCTTACATTGCATCTGAGGTGGACTCCGCAACACAAGTACCGGGATCCATAA 1686 0.4371 MGFISGMIVGFAVGVGLIVALARYGSIRSKRRSDMAKTIAAFARMTVEDSRKLLPPNFYPSWVLKWLNSQLDKIWPYVNEAASELIKSNVEPILEQYKPSILSALTFSKLTLGTVAPQFTGIAIVEEDSGPNEVTMELEMQWDGNPNIVLDIKTRVGVVLPVQVKNIGFTGVFRLIFKPLVHEFPGFGAVCFSLREKKDLDFTLKVVGGDISSIPGISDAIEETIRDAIEDSITWPVRKIIPIIAGDYSNLELKPVGMLDVKLVQAKELANKDLIGKSDPYAVIFVRPLRDRTKTSKTINNNLNPVWNEHFEFVVEDLSTQHLTVRIFDDEGIQASELIGCAQVPLKDLEPGKVKVVWLKLVKDLEVQRDNKPRGEVHLELLYVPFGADNTFKNPFDPDFSLTTFEKTLKSIACEAEAGDLSRSPSSRKKNVIVRGVLSVTVISAEDLPVADLMGKADPFVVLTLKKSGKKLKTRVVNESLNPVWNQTFDFVVEDGLHEMLVVEVWDHDTFGKEKFGKVIMTLTKVILEGEYQETYPLEGAKSGRLTLHLRWTPQHKYRDP* 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g0871 561 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 432 555 IPR035892 -
Dod09g0871 561 Gene3D C2 domain 433 559 IPR035892 -
Dod09g0871 561 SMART C2_3c 437 535 IPR000008 -
Dod09g0871 561 SMART C2_3c 258 358 IPR000008 -
Dod09g0871 561 ProSiteProfiles C2 domain profile. 417 536 IPR000008 -
Dod09g0871 561 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 60 244 IPR031468 GO:0008289
Dod09g0871 561 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 1 560 IPR045050 GO:0008289
Dod09g0871 561 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 65 243 IPR039010 -
Dod09g0871 561 CDD C2 438 538 - -
Dod09g0871 561 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 255 386 IPR035892 -
Dod09g0871 561 Pfam C2 domain 258 361 IPR000008 -
Dod09g0871 561 Pfam C2 domain 436 538 IPR000008 -
Dod09g0871 561 PRINTS C2 domain signature 453 465 IPR000008 -
Dod09g0871 561 PRINTS C2 domain signature 501 509 IPR000008 -
Dod09g0871 561 PRINTS C2 domain signature 479 492 IPR000008 -
Dod09g0871 561 ProSiteProfiles C2 domain profile. 238 359 IPR000008 -
Dod09g0871 561 Gene3D C2 domain 249 385 IPR035892 -
Dod09g0871 561 PANTHER SYNAPTOTAGMIN-4 1 560 - -
Dod09g0871 561 CDD C2 259 361 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g0871 Dod-Chr9 28301559 28307720 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g0871 292 553 Lipid Metabolism Gene Families AT4G00700 25.685 8.61e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g0871 - - gmx:100787972 939.873
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod09g0871 09 28301559 28307720 Dod09g0871 09 28301559 28307720 ECH