Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g1778 ATGGGATTCTTCAGCGGCATGTTCGTTGGTTTCGCCATTGGTATCGGATTGATCATCGCTTTCGCTCGTCACGAGAGCGTCCGATCCAAGCGTCGCTCCGATTTGGCGAAGACGATAGCACAGTTTGCGAGGATGACAGTGGAAGATTCCAGAACAATTTTGCCTTCTAAGGTCTATCCGCCATGGGTGTTAAATTGGCTTAATATCCAACTCAAGAGGATTTGGCCATTCGTTAATGATGCAACGTCAGAGATGATAAGAACCAGTGTGGAACCCATTCTTGAACAATATAGGCCTGCTATTTTGTCTTCTCTCACCTTCTCCACGTTGACCCTTGGCTCTGTGCCTCCACAATTTACAGGAATTACAATTGTTGAAGAGAAAAGTGGGCCTGATGGGGTGACTATGGATCTTGAGATGCAATGGGATGGTAACCCAGATATCGTTCTTGACATTAAAACCCGAGTTGGTCTTGTACTTCCTGTACAGGTAAAAAATATTGGATTCACTGGGGTTTTCAGGTTGATCTTCAAGCCACTAGTGGACGAGTTCCCTGCTTTTGGAGCTGTTTGTTTTTCCTTGAAGGAAAAGAAAGATCTGGATTTTACTCTTAAGGTTATTGGTGGTGATTTATCAACTTTACCAGGGGTATCTGTTGCTATAGAGGAAACAATTAGAGATGCCATTGAAGACTCTATAACTTGGCCAGTACGCATAGTTATACCAATTGTACCTGGGGATTACAGTAATCTAGAGTTGAAACCGGTTGGAATACTAGAAGTAAAACTAGTGCAAGCAAAGGGCTTAACAAATAAAGATATAATTGGGAAATCCGATCCTTATGCTGTCATATTTGTCCGCCCCCTTCGTGCCAGAACCAAAACCAGTAAAGTAATGAACAACCAGTTGAATCCAGTATGGAATGAGCACTTTGAATTCATTATTGAAGATGCGTCAACGCAGCACTTGACCATAAGAATTTTCGATGATGAAGGCATTCAGGCTTCTGAACTTATTGGCTGTGCCCAAGTTTCGCTGAACGACCTTGAACCTGGTAAAGTCAAGGACGTATGGCTTAAGCTGGTTAAGGATTTGGAGGTCCATAGAGATAACAAATACAGGGGTGAGGTGCACGTGGAGCTCTTATACTGCCCATTTGGAGTGGAAAGCGCCATTAAGAACCCTTTTGACCCTGATTTCTCATTAACCACGTTCGAGAAGACTCTCAAGAGTGGAACTAGTGATGCAGAGGGTGATGATCTTCTAGAGTCACGTAGGAGAAACAACGTGATTGTAAGAGGGGTTCTATCTGTGACAGTGATTTCAGCGGAAGACTTGCCAGCAGTGGACTTAATGGGCAAGGCTGATCCATTTGTTGTCCTTATGTTGAAAAAAACAGAAAAAAAACTCAAGACCAGAGTTGTAAATGAATCCCTAAACCCAGTTTGGAATCAAACATTTGATTTTGTTGTAGAGGACGGCTTACACGAAATGTTAATTCTTGAAGTATACGATCATGATACGTTTGGCAAGGAAAAAATTGGAAGAGTGATCTTGACACTGACTAAGGTCATCTTAGAAGGGGAATACAATGAAACTTATCCTATAGATGGAGCTAAATCCGGAGAAATTTCTTTGCATTTGAAGTGGACTCCACAGCACAAGTTCCGAGATCATTAG 1680 0.4232 MGFFSGMFVGFAIGIGLIIAFARHESVRSKRRSDLAKTIAQFARMTVEDSRTILPSKVYPPWVLNWLNIQLKRIWPFVNDATSEMIRTSVEPILEQYRPAILSSLTFSTLTLGSVPPQFTGITIVEEKSGPDGVTMDLEMQWDGNPDIVLDIKTRVGLVLPVQVKNIGFTGVFRLIFKPLVDEFPAFGAVCFSLKEKKDLDFTLKVIGGDLSTLPGVSVAIEETIRDAIEDSITWPVRIVIPIVPGDYSNLELKPVGILEVKLVQAKGLTNKDIIGKSDPYAVIFVRPLRARTKTSKVMNNQLNPVWNEHFEFIIEDASTQHLTIRIFDDEGIQASELIGCAQVSLNDLEPGKVKDVWLKLVKDLEVHRDNKYRGEVHVELLYCPFGVESAIKNPFDPDFSLTTFEKTLKSGTSDAEGDDLLESRRRNNVIVRGVLSVTVISAEDLPAVDLMGKADPFVVLMLKKTEKKLKTRVVNESLNPVWNQTFDFVVEDGLHEMLILEVYDHDTFGKEKIGRVILTLTKVILEGEYNETYPIDGAKSGEISLHLKWTPQHKFRDH 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g1778 559 CDD C2 436 536 - -
Aed4g1778 559 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 60 244 IPR031468 GO:0008289
Aed4g1778 559 PRINTS C2 domain signature 451 463 IPR000008 -
Aed4g1778 559 PRINTS C2 domain signature 499 507 IPR000008 -
Aed4g1778 559 PRINTS C2 domain signature 477 490 IPR000008 -
Aed4g1778 559 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 430 553 IPR035892 -
Aed4g1778 559 PANTHER SYNAPTOTAGMIN-4 1 558 - -
Aed4g1778 559 Pfam C2 domain 257 361 IPR000008 -
Aed4g1778 559 Pfam C2 domain 434 536 IPR000008 -
Aed4g1778 559 SMART C2_3c 435 533 IPR000008 -
Aed4g1778 559 SMART C2_3c 258 358 IPR000008 -
Aed4g1778 559 Gene3D C2 domain 253 392 IPR035892 -
Aed4g1778 559 Gene3D C2 domain 431 558 IPR035892 -
Aed4g1778 559 ProSiteProfiles C2 domain profile. 417 534 IPR000008 -
Aed4g1778 559 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 1 558 IPR045050 GO:0008289
Aed4g1778 559 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 65 244 IPR039010 -
Aed4g1778 559 ProSiteProfiles C2 domain profile. 238 359 IPR000008 -
Aed4g1778 559 CDD C2 259 361 - -
Aed4g1778 559 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 255 386 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g1778 Aed-Chr4 22080262 22085514 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g1778 392 524 Lipid Metabolism Gene Families AT1G51570 31.579 2.75e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g1778 - - gmx:100787972 991.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g1778 4 22080262 22085514 Aed4g1778 4 22080262 22085514 ECH