Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3897 ATGGGATTCATCAGCGGCATGATCGTCGGTGTCGCCGTCGGAATCGGATTGATCGTCGCTTACGCTCGTCACGAGAGTTTCCGATCCAAGCGTCGTTCCGATTTGGCTAAGACAATTGCAAGGTTTGCGAGGATGACGGTGGAAGATTCCAGAAAGCTTCTTCTTCCTAAGTTCTATCCGTCATGGGTGGTTTTCACTCGGAGACAGAAGTTGAGTTCACTGCACTTCAAATTTTCAGCGAATGCGGACGGATTAAATTGGCTTAATAGCCAATTAAGCAAGCTGTGGCCATATATTAATGAGGCGGCGTCGGAGTTGATTAGAAGCAATGTTGAACCCATTCTTGAACAATATAAGCCAATTGTTTTGTCATCTCTCACCTTCTCCAAGTTGACCCTTGGCACTGTGGCTCCACAATTTACAGGAATTGAAATTGTCGATGAGGATAGTGGGCCTAATGGAGTGACCATGGAGCTAGAGATGCAGTGGGATGGTAACCCGAATATAGTTCTTGACATCAAAACCAAAGTTGGTGTTGTAATTCCTGTGCAGGTAAAAAATATTGGATTCACTGGGGTTTTCAGGTTGATCTTCAAACCGCTTGTAAATGAGTTTCCTGGTTTTGGAGCTGTGTGTTTTTCCTTGAGAGAAAAGAGAGATCTGGATTTTACTCTCAAAGTGGTTGGTGGTGACATATCAGCTATACCGGGGATATCTGATGCCATAGAGGAAACAATTCGAGATGCCATTGAAGACTCTATAACTTGGCCAGTACGCAAAATTATACCAATTATACCTGGGGACTACAGCAACCTAGAATTGAAACCGGTTGGAACATTGGAAGTAAAACTAGTGCAAGCAAAAAACTTAACAAATAAAGATCTGATTGGGAAATCCGATCCTTATGCTACCGTATTTGTACGCCCTCTTCGTGAGAGAACAAAAACCAGTAAAACAATCAACAACCAGCTGAATCCAATATGGAATGAGCACTTCGATTTCATTGTCGAAGATGCATCAACCCAGCACTTGACCATAAGAATTTTTGATGATGAAGGAGTTCAAGCATCTGAGCTTCTTGGCTGTGCCCAAATTCCGCTGAAGGAACTCGAACCTGGTAAAGTAAAGGATGTATGGTTGAAATTGGTGAAGGATCTGGAAATCCATAGAGATAACAAATACAGGGGTGAGGTGCAGTTGGAGCTCTTGTACTGCCCATTTGGGGTTGATACCAACTTTAAGAACCCTTTTGACCCTGAGTACTCATTAACCACGTTCGAGAAGACCCTTAAGAGTGGAGTAGTTGACGCAGAGGATGAGGATCTTACAAAAGCATCACCATCACGGAGGAGAAGCAACGTGATTGTAAGAGGTGTTCTATCTGTAACAGTGATTTCAGCTGAAGACTTGCCAGTAGTGGACTTCATGGGCAAAGCTGATCCATTTGTCGTCCTAATGTTGAAAAAATCAGAAAAGAAACTGAAGAGCAGGGTTGTAAATGAATCCCTAAACCCAGTATGGAATCAAACATTTGACTTTGTTGTGGAGGATGGCTTGCACGAAATGTTAATTATTGAAGTCTGGGATCATGATACGTTTGGCAAGGAAAAAATGGGAAGAGTGATCATGACACTGACTAAGGTCATCTTAGAAGGGGAATACGATGAAACTTTTCCTCTAGATGCAGCTAAATCCGGGAAGATCACTTTGCATCTGAGGTGGACTCCCCAGCATAAGTACCGGGATCCTTAG 1752 0.4304 MGFISGMIVGVAVGIGLIVAYARHESFRSKRRSDLAKTIARFARMTVEDSRKLLLPKFYPSWVVFTRRQKLSSLHFKFSANADGLNWLNSQLSKLWPYINEAASELIRSNVEPILEQYKPIVLSSLTFSKLTLGTVAPQFTGIEIVDEDSGPNGVTMELEMQWDGNPNIVLDIKTKVGVVIPVQVKNIGFTGVFRLIFKPLVNEFPGFGAVCFSLREKRDLDFTLKVVGGDISAIPGISDAIEETIRDAIEDSITWPVRKIIPIIPGDYSNLELKPVGTLEVKLVQAKNLTNKDLIGKSDPYATVFVRPLRERTKTSKTINNQLNPIWNEHFDFIVEDASTQHLTIRIFDDEGVQASELLGCAQIPLKELEPGKVKDVWLKLVKDLEIHRDNKYRGEVQLELLYCPFGVDTNFKNPFDPEYSLTTFEKTLKSGVVDAEDEDLTKASPSRRRSNVIVRGVLSVTVISAEDLPVVDFMGKADPFVVLMLKKSEKKLKSRVVNESLNPVWNQTFDFVVEDGLHEMLIIEVWDHDTFGKEKMGRVIMTLTKVILEGEYDETFPLDAAKSGKITLHLRWTPQHKYRDP* 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3897 583 CDD C2 460 560 - -
Lja1g3897 583 Gene3D C2 domain 455 581 IPR035892 -
Lja1g3897 583 ProSiteProfiles C2 domain profile. 259 380 IPR000008 -
Lja1g3897 583 PANTHER SYNAPTOTAGMIN-4 1 582 - -
Lja1g3897 583 SMART C2_3c 279 379 IPR000008 -
Lja1g3897 583 SMART C2_3c 459 557 IPR000008 -
Lja1g3897 583 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 85 264 IPR039010 -
Lja1g3897 583 Pfam C2 domain 458 560 IPR000008 -
Lja1g3897 583 Pfam C2 domain 278 382 IPR000008 -
Lja1g3897 583 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 276 407 IPR035892 -
Lja1g3897 583 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 1 582 IPR045050 GO:0008289
Lja1g3897 583 Gene3D C2 domain 270 406 IPR035892 -
Lja1g3897 583 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 81 265 IPR031468 GO:0008289
Lja1g3897 583 CDD C2 280 382 - -
Lja1g3897 583 ProSiteProfiles C2 domain profile. 439 558 IPR000008 -
Lja1g3897 583 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 454 577 IPR035892 -
Lja1g3897 583 PRINTS C2 domain signature 475 487 IPR000008 -
Lja1g3897 583 PRINTS C2 domain signature 523 531 IPR000008 -
Lja1g3897 583 PRINTS C2 domain signature 501 514 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3897 Lja-Chr1 49171760 49177547 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3897 415 570 Lipid Metabolism Gene Families AT3G61300 25.309 5.06e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3897 - - gmx:100787972 959.903
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3897 1 49171760 49177547 Lja1g3897 1 49171760 49177547 ECH