Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1223 ATGGGATTCTTCGGCGGCATGATCGTCGGTATCGCCATTGGTATCGGGTTGATCATCGGTTTCGCTCGTCACGAGAGCGTTCGATCCAAACGTCGCTCCGATTTGGCGAAGACGATAGCAGCGTTTGCGAGAATGACAGTGGAAGATTCCAGAAAACTTTTGCCTCCTAAGTTCTATCCATCATGGGTGGTCTTCACACGGAGACAGAAGTTAAATTGGCTTAATGTCCAACTCAGGAGGATTTGGCCACATGTTGATGAGGCAGTGTCTGAGTTGATAAAAACCAACGTGGAACCAATTCTTGAACAGTATAGACCGGTTGTTTTGGCTTCTCTCAGTTTCTCCAAGTTGACCCTTGGCACTGTGGCTCCACAATTTACAGGAGTTACTATTCTTGAAGAGAACAGTGGGCCTGATGGTGTGACTATGGATCTTGAGATGCAATGGGATGGTAACCCGAATATCGTTCTTGACATCAAAACCCGAGTTGGTGTCGTACTTCCTGTACAGGTAAAAGATATTGGATTCACTGGGGTTTTCAGGTTGATCTTCAAACCACTAGTGAATGAGTTTCCGGGTTTCGGAGCTGTTTGTTTTTCCTTGAAAGAAAAGAAAGATCTGGATTTTACTCTGAAGGTTATTGGTGGTGATTTATCAGCCTTACCGGGAGTATCTGATGCAATAGAGGAAACAATTAGAGATGCGATTGAAGACTCTATAACTTGGCCTGTGCGCCAAATTATACCCATTTTACCTGGAGATTACAGTAATCTAGAGTTGAAACCGGTTGGAATACTGGAAGTTAAACTAGTGCAAGCAAAGAACTTAACAAATAAAGATTTGATTGGGAAATCCGATCCTTACGCTGTCCTTTTTGTACGCCCGCTTCGTGCCAGAACCAAAACCAGTAAAGTAGTGAACAACCAGTTGAGTCCAATATGGAACGAACACTTTGAATTCACTATAGAAGATGCGGCAACGCAGCACTTGACCGTAAGAATTTTCGATGATGAAGGCCTTCAGGCTTCTGAACTTATTGGCTGTGCCCAAGTTTCACTGCAGGAGCTCGAACCTGGTAAAGTCAAGGATGTATGGCTTAAGCTGGTTAAGGATTTGGAGATCCGTAGAGATAACAAATACAGGGGTGAGGTGCACTTGGAGCTCTTGTACTGCCCAATTGGAATGGAAAGCACCATCAAGAACCCTTTTGACCCTGATATCTCATTAACCTCGTTCGAGAAGACCCTCAAGAGTGGTGAGACAGAGGTTGAGGATCCTACAGGGTCACGTAAGAGAAGCAACGTGATCGTAAGAGGGGTTCTATCTGTCACGGTGATTTCAGCTGAAGACTTACCAGTAGTGGACTTAATGGGCAAGGCTGATCCATTTGTTGTCCTTAGTTTGAAAAAAACAGAAAAAAAACTCAAGACCAGAGTTGTAAATGAATCCCTAAACCCAGTTTGGAATCAAACATTTGATTTTGTTGTGGAGGATGGCTTACACGAAATGTTAATTCTGGAAGTCTACGATCATGATACGTTTGGCAAGGAAAAAATTGGAAGAGTGATCTTAACACTGACTAAGGTCATCTTAGAAGGAGAATACAATGAAACTTATCCTCTAGATGGAGCTAAATCCGGAAGCATTTCTTTATATTTGAAGTGGACTCCGCAGCACAAATTCCGGGATACTTAG 1695 0.4324 MGFFGGMIVGIAIGIGLIIGFARHESVRSKRRSDLAKTIAAFARMTVEDSRKLLPPKFYPSWVVFTRRQKLNWLNVQLRRIWPHVDEAVSELIKTNVEPILEQYRPVVLASLSFSKLTLGTVAPQFTGVTILEENSGPDGVTMDLEMQWDGNPNIVLDIKTRVGVVLPVQVKDIGFTGVFRLIFKPLVNEFPGFGAVCFSLKEKKDLDFTLKVIGGDLSALPGVSDAIEETIRDAIEDSITWPVRQIIPILPGDYSNLELKPVGILEVKLVQAKNLTNKDLIGKSDPYAVLFVRPLRARTKTSKVVNNQLSPIWNEHFEFTIEDAATQHLTVRIFDDEGLQASELIGCAQVSLQELEPGKVKDVWLKLVKDLEIRRDNKYRGEVHLELLYCPIGMESTIKNPFDPDISLTSFEKTLKSGETEVEDPTGSRKRSNVIVRGVLSVTVISAEDLPVVDLMGKADPFVVLSLKKTEKKLKTRVVNESLNPVWNQTFDFVVEDGLHEMLILEVYDHDTFGKEKIGRVILTLTKVILEGEYNETYPLDGAKSGSISLYLKWTPQHKFRDT* 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1223 564 ProSiteProfiles C2 domain profile. 243 366 IPR000008 -
Vra5g1223 564 PANTHER SYNAPTOTAGMIN-4 1 563 - -
Vra5g1223 564 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 435 558 IPR035892 -
Vra5g1223 564 CDD C2 266 368 - -
Vra5g1223 564 ProSiteProfiles C2 domain profile. 422 539 IPR000008 -
Vra5g1223 564 CDD C2 441 541 - -
Vra5g1223 564 Gene3D C2 domain 256 393 IPR035892 -
Vra5g1223 564 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 67 251 IPR031468 GO:0008289
Vra5g1223 564 SMART C2_3c 265 365 IPR000008 -
Vra5g1223 564 SMART C2_3c 440 538 IPR000008 -
Vra5g1223 564 Pfam C2 domain 439 541 IPR000008 -
Vra5g1223 564 Pfam C2 domain 264 368 IPR000008 -
Vra5g1223 564 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 1 563 IPR045050 GO:0008289
Vra5g1223 564 PRINTS C2 domain signature 456 468 IPR000008 -
Vra5g1223 564 PRINTS C2 domain signature 482 495 IPR000008 -
Vra5g1223 564 PRINTS C2 domain signature 504 512 IPR000008 -
Vra5g1223 564 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 262 394 IPR035892 -
Vra5g1223 564 Gene3D C2 domain 436 563 IPR035892 -
Vra5g1223 564 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 70 250 IPR039010 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1223 Vra-Chr5 18624161 18632024 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1223 256 556 Lipid Metabolism Gene Families AT1G51570 22.619 7.67e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1223 - - gmx:100787972 980.319
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1223 5 18624161 18632024 Vra5g1223 5 18624161 18632024 ECH