Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g00671 ATGGGATTCTTCAGCGGCATCATCATTGGTTTTGCGATTGGTATCACATTGATCATCGCTTTTGCTAAACAAGAAAGCACTCGATCCAAGCGTCGCATCGATTTGGCAAAGATGATCGCAAAGTTTGCGAGGTTGACGGTGGAAGATTCTAGAAAACTTCTACCTCCAAATTTTTATCCATCATGGGTGGTCttttctcaaaaacaaaaattgagttCAACCTgttactttcacatttttatttttatttCATctgaattgataaaaaataatgttgaaCCAATTCTTGAACAATATCGACCGGTGATTTTGTCGTCTCTCACATTTTCCACATTGACACTTGGTAGTGTTGCTCCACAATTTACAGGAATTGAAATTGTTGAAGAGGGTAGTGGGCCTAGTGGAGTGACAATGGAGTTTGACATGCAGTGGGATGGTAACCCTGATATTGTTCTTGACATTAAAACCAAAGTTGGTCTTGTATTGCCTGTGCAGGTAAAAAATATTGGATTCACTGGGGTTTTCAGGTTGATCTTCAAACCTCTAGTAAATGATTTCCCTGCTTTTGGAGCTGTTTTATTTTCCCTAAGAGAAAAGAAATCTCTTGATTTTACTCTTAAGGTTATTGGTGGTGATATTTCAGCCTTACCAGGGGTATCTGAAGCTATAGAGgaAACAATTCGAGATGCCATCGAAGACTCTATAACTTGGCCAGTACGCCAAATTATACCAATTATACCAGGAGATTACAGTAACCTGGAACTGAAACCTGTTGGAACACTAGATGTAAAACTAGTGCAAGCAAAGAACTTAACAAATAAAGATTTAATTGGAAAATCTGATCCTTTTGCTGTGGTATTTGTACGCCCACTTCGTGACAGAACCAAAACTAGTCAAACAATCAATAACCAGCTGAATCCAATATGGAATGAGCACTTTGAATTCGTTATTGAAGATGCATCAACACAACACTTGACCATAAGAATCTTTGACGACGAAGGAATTCAGGCAGCTGAACTTATTGGTTGTGCTCAAGTTTCCCTAAAGGAACTTGAACCTGGTAAAGTCAAGGTTGTATGGTTGAAATTAGTTAAGGATTTACAGGTCCATAGAGATAACAAATACAGGGGTGAGGTGCACTTGGAGCTCTTGTATTGTCCATTTGGAGTTGAGCACACTTTTAAGAGTCCTTTTAACGCTGATTACTCATTAACCACGTTTGAAAAGACTCTTAAGAGCGATGCAAAGGATGATGATACTTCAACATCATCACGGAAAAAAAGTAATGTAATTGTAAGAGGAGTTCTATCGGTCACCGTAATTTCAGCTGAAGACTTACCAGTAGTGGATTTAATGGGCAAAGCTGACCCGTTTGTTGTGCTTTCATTgaaaaaatcggaaaaaaaacaaaagacaagAGTTGTAAATGAAAGTTTGAATCCAGTTTGGAATCAAACATTTGACTTCGTTGTGGAGGATGGCTTACACGACATGTTAATTGTTGAACTTTGGGATCATGATACATTTGGCAAGgaaaaaatgGGTAAAGTGATCATGACACTAACCAAAGTGATCTTAGAAGGGGAATACGAAGAAACATTTGTTTTGGATGATGCTAAATCCGGAAAGATTAATTTGCATTTAAAATGGGCTGCACAACACAAGTATCGTGAACCTTAA 1680 0.3625 MGFFSGIIIGFAIGITLIIAFAKQESTRSKRRIDLAKMIAKFARLTVEDSRKLLPPNFYPSWVVFSQKQKLSSTCYFHIFIFISSELIKNNVEPILEQYRPVILSSLTFSTLTLGSVAPQFTGIEIVEEGSGPSGVTMEFDMQWDGNPDIVLDIKTKVGLVLPVQVKNIGFTGVFRLIFKPLVNDFPAFGAVLFSLREKKSLDFTLKVIGGDISALPGVSEAIEETIRDAIEDSITWPVRQIIPIIPGDYSNLELKPVGTLDVKLVQAKNLTNKDLIGKSDPFAVVFVRPLRDRTKTSQTINNQLNPIWNEHFEFVIEDASTQHLTIRIFDDEGIQAAELIGCAQVSLKELEPGKVKVVWLKLVKDLQVHRDNKYRGEVHLELLYCPFGVEHTFKSPFNADYSLTTFEKTLKSDAKDDDTSTSSRKKSNVIVRGVLSVTVISAEDLPVVDLMGKADPFVVLSLKKSEKKQKTRVVNESLNPVWNQTFDFVVEDGLHDMLIVELWDHDTFGKEKMGKVIMTLTKVILEGEYEETFVLDDAKSGKINLHLKWAAQHKYREP 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g00671 559 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 257 388 IPR035892 -
Tsu07g00671 559 ProSiteProfiles C2 domain profile. 240 361 IPR000008 -
Tsu07g00671 559 PRINTS C2 domain signature 451 463 IPR000008 -
Tsu07g00671 559 PRINTS C2 domain signature 499 507 IPR000008 -
Tsu07g00671 559 PRINTS C2 domain signature 477 490 IPR000008 -
Tsu07g00671 559 PANTHER SYNAPTOTAGMIN-4 1 558 - -
Tsu07g00671 559 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 79 245 IPR039010 -
Tsu07g00671 559 CDD C2 261 363 - -
Tsu07g00671 559 Pfam C2 domain 434 534 IPR000008 -
Tsu07g00671 559 Pfam C2 domain 259 363 IPR000008 -
Tsu07g00671 559 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 371 542 IPR035892 -
Tsu07g00671 559 ProSiteProfiles C2 domain profile. 416 534 IPR000008 -
Tsu07g00671 559 SMART C2_3c 260 360 IPR000008 -
Tsu07g00671 559 SMART C2_3c 435 533 IPR000008 -
Tsu07g00671 559 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 54 246 IPR031468 GO:0008289
Tsu07g00671 559 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 1 558 IPR045050 GO:0008289
Tsu07g00671 559 Gene3D C2 domain 431 557 IPR035892 -
Tsu07g00671 559 CDD C2 436 532 - -
Tsu07g00671 559 Gene3D C2 domain 251 387 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g00671 Tsu-Chr7 5352157 5356604 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g00671 255 500 Lipid Metabolism Gene Families AT3G61300 26.772 7.14e-12 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g00671 - - gmx:100787972 871.307
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g00671 07 5352157 5356604 Tsu07g00671 07 5352157 5356604 ECH