Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev08g0552 ATGGAGGACGATGAAATAGCTGGGTTCGTCACTGCGTACCTGAAGAGGAAAGGGTTCGCCCAAACGGAGAAGATCTTCCAGGAAGAGTTCAAACACAACAAGATCGATTCCCCTCTCGAACCCGACATTGCCAACCACACCCTTGCCTTCTCCCAGTTGGAGAGTGGTCCTGCGAGATTCCATGATGGATATAGCAGACTAAGATCATGGACTTACTGTTCTCTAGATTTGTACAAACATGAGTTGCTCCGGGTGCTTTATCCAGTATTTATACATTGCTTCATGGATCTTGTGGCAAAAGGGCATGTTCAGGAAGCTCGCAACTTTTTCAATACCTTCCGTGAAGATCATGAAATGATGCACTTACGCGACCTTCAGAAGTTGGAAGGAGTTCTTTCCCCTACACATCTGGAGGAAATGGAATTTGCCCATTCTCTTAGGAAGTGTAAATTCAACATTAAGATATGTGAGTATTCCTATGAGCTTCTGTTGCAACATCTACACAGTACACTATCAACTACTATACTTGGTATCATCAATGAGCATATTAACTTCCAAGTTACTCCTGGACAACCTAGCTCAATTGCTGATGATCCAGAGGCTGTTACCCTTACTGGAAGCAGCCAGGATGCAGCAAACCAGATAAATCAGAAAGAAATACACTGGGGGTTGCTTGAAGACTCTCTCGAAGAACGACTGGAGAAGGCTGGGGCCTTGCTTTCAGACTCTGAAAAGGGCGACGGGGAAGCAAAAGATGGGGAGAATGATGAGAGTAAGAAAAGACCAATTGAAGGAGGAAAGCAAGGTGCTTCGGTCAAAAAGGTAAAAAAGGACAAGGGCGGGAGTGCAGCTGGGAAAAATGCGAAACCTGAAGCTAACACTGTACCTGCAGCTCCACGAGTTAAACCGGAACTCCCCTTACCCATAATCCCAACTGAGGTGGAACAATCTATCATTGAAGATTTGAGGAACCGTGTACAACTCAGTAGTGTTGCACTACCATCAGTTAGCTTTTACACATTTATCAATACACATAATGGTTTAAGCTGTTCTTCGATATCCCCTGATGGATCATTGGTAGCTGGAGGATTTTCTGACTCATCACTGAAGATTTGGGATATGGCAAAGCTTGGACAGCAGGCAACTAATTCTCTTTCACAGGATGAGAATGACACAATGCAAAATCAGCAAATGCTTGGGCAAAGTGGTGGGAAAAGGCAGTATACGTTGTTTCAAGGTCATTCAGGGCCAGTTCATGCAGCCTCTTTTAGTCCCGTTGGGGATTTTATTCTTTCATCCTCAGCAGACTCAACAATTCGATTATGGAGCACAAATCTTAATGCTAATCTTGTTTGTTACAAAGGTCACAATTACCCTGTCTGGGATGTTCAGTTTAGTCCTGTAGGGCATTATTTTGCTAGCTCTTCACATGACAGAACTGCTAGGATTTGGTCCATGGACAGGATACAGCCCTTAAGAATAATGGCAGGACACTTGTCTGATGTTGATTGCGTGCAATGGCATGCCAACTGCAACTACATTGCCACCGGGTCCAGTGACAAAACTGTACGACTATGGGATGTTCAGAGTGGGGAGTGTGTCCGGGTTTTCGTTGGTCACAGGAGTATGATTTTGTCTTTGGCAATGTCTCCTGATGGTCGCTATATGGCATCTGGTGATGAAGATGGCACAATCATGATGTGGGACCTCTCTAGTGGCCGTTGTCTCACGCCTTTGATTGGCCACACCAATTGCGTCTGGTCTCTCGCCTTCAGCTGTGAAGGTTCTGTCCTAGCATCTGGTTCTGCTGATTGCACTGTAAAATTATGGGATGTAAATACGAGCACTAAGGTTTCAAGGACTGAAGAAAAGAATGGGAATGCGAGCAGACTCAGATCACTGAAAACCCTGCCAACCAAATCTACTCCAGTTTATGCTTTGCGGTTTTCTCGTAGGAATCTTCTTTTTGCAGCTGGAGCTCTTTCAAAAAGCTCCCAATCCTTGTCACGAAGAAAACCTTCTTCTTCTACTCAAACGCAATTACCCAGCGGGTCGACCCGGATTGTCTACAGGGAATCGGGTCGGGCATCGGAGTCCGAATTGCCGTTCTGGCAGCGCACCTGGTTCATCGCATTGCTCTTCGTCATGGCTCTTGGATTCTTCGCCCTCGCTCTCTTCCTCTTCCTCACCCTCGATTCTGACATCTCTCCTCCTTCCTCCGCCTCTGCCTCCGACGAAGGCGTCGAGGTGCAGGTTACTTACGGGTCGGTTGTGAAGCTGATGCACGAGAAGACCAAATTTCGGTTGCATTCTCATGATGTTCCGTACGGTTCTGGAAGTGGACAACAATCTGTTACTGGTTTCCCCAATGTCGACGATTCCAATAGTTACTGGATAGTTAGACCTGAACCAGGAACTTCTGCTAAACAAGGTGACACCATTAAAAGTGGCACTATCATTAGATTGCAACACATGAGGACAAGGAAGTGGTTGCACAGCCATTTGCATGCTTCCCCAATATCTGGCAATCTTGAGGTGAGTTGCTTTGGAGGAGAATCCGAGTCTGACACTGGGGACTATTGGAGGCTTTTTATAGAGGGAAGTGGGAAGACTTGGAAGCAAGATCAGAAGGTTAGGCTTCAACATGTGGACACTGGAGGCTATCTACACAGTCATGATAAGAAATACTCTCGGATTGCTGGAGGTCAACAAGAGGTCTGCGGTGTTCGTGAAAACGAGCGACATGTCTGGGTGGCAGCTGAAGGCGTCTACCTTCCAATTACTGAAAGCAAATCGTCAAGTTGA 2805 0.4617 MEDDEIAGFVTAYLKRKGFAQTEKIFQEEFKHNKIDSPLEPDIANHTLAFSQLESGPARFHDGYSRLRSWTYCSLDLYKHELLRVLYPVFIHCFMDLVAKGHVQEARNFFNTFREDHEMMHLRDLQKLEGVLSPTHLEEMEFAHSLRKCKFNIKICEYSYELLLQHLHSTLSTTILGIINEHINFQVTPGQPSSIADDPEAVTLTGSSQDAANQINQKEIHWGLLEDSLEERLEKAGALLSDSEKGDGEAKDGENDESKKRPIEGGKQGASVKKVKKDKGGSAAGKNAKPEANTVPAAPRVKPELPLPIIPTEVEQSIIEDLRNRVQLSSVALPSVSFYTFINTHNGLSCSSISPDGSLVAGGFSDSSLKIWDMAKLGQQATNSLSQDENDTMQNQQMLGQSGGKRQYTLFQGHSGPVHAASFSPVGDFILSSSADSTIRLWSTNLNANLVCYKGHNYPVWDVQFSPVGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVQWHANCNYIATGSSDKTVRLWDVQSGECVRVFVGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLSSGRCLTPLIGHTNCVWSLAFSCEGSVLASGSADCTVKLWDVNTSTKVSRTEEKNGNASRLRSLKTLPTKSTPVYALRFSRRNLLFAAGALSKSSQSLSRRKPSSSTQTQLPSGSTRIVYRESGRASESELPFWQRTWFIALLFVMALGFFALALFLFLTLDSDISPPSSASASDEGVEVQVTYGSVVKLMHEKTKFRLHSHDVPYGSGSGQQSVTGFPNVDDSNSYWIVRPEPGTSAKQGDTIKSGTIIRLQHMRTRKWLHSHLHASPISGNLEVSCFGGESESDTGDYWRLFIEGSGKTWKQDQKVRLQHVDTGGYLHSHDKKYSRIAGGQQEVCGVRENERHVWVAAEGVYLPITESKSSS* 935
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev08g0552 934 ProSiteProfiles MIR domain profile. 749 803 IPR016093 -
Aev08g0552 934 MobiDBLite consensus disorder prediction 238 284 - -
Aev08g0552 934 ProSitePatterns Trp-Asp (WD) repeats signature. 556 570 IPR019775 -
Aev08g0552 934 MobiDBLite consensus disorder prediction 667 687 - -
Aev08g0552 934 MobiDBLite consensus disorder prediction 238 298 - -
Aev08g0552 934 SMART mir_2 811 866 IPR016093 -
Aev08g0552 934 SMART mir_2 749 803 IPR016093 -
Aev08g0552 934 SMART mir_2 869 922 IPR016093 -
Aev08g0552 934 Gene3D - 571 697 IPR015943 GO:0005515
Aev08g0552 934 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 495 532 - -
Aev08g0552 934 ProSitePatterns Trp-Asp (WD) repeats signature. 598 612 IPR019775 -
Aev08g0552 934 Gene3D TFIID subunit TAF5, NTD2 domain 40 188 IPR037264 -
Aev08g0552 934 Pfam MIR domain 770 913 IPR016093 -
Aev08g0552 934 ProSiteProfiles Trp-Asp (WD) repeats profile. 341 374 IPR001680 GO:0005515
Aev08g0552 934 ProSiteProfiles Trp-Asp (WD) repeats profile. 411 443 IPR001680 GO:0005515
Aev08g0552 934 Pfam WD domain, G-beta repeat 450 485 IPR001680 GO:0005515
Aev08g0552 934 Pfam WD domain, G-beta repeat 343 373 IPR001680 GO:0005515
Aev08g0552 934 Pfam WD domain, G-beta repeat 490 527 IPR001680 GO:0005515
Aev08g0552 934 Pfam WD domain, G-beta repeat 531 569 IPR001680 GO:0005515
Aev08g0552 934 Pfam WD domain, G-beta repeat 408 443 IPR001680 GO:0005515
Aev08g0552 934 Pfam WD domain, G-beta repeat 573 611 IPR001680 GO:0005515
Aev08g0552 934 Gene3D - 737 932 - -
Aev08g0552 934 ProSitePatterns Trp-Asp (WD) repeats signature. 514 528 IPR019775 -
Aev08g0552 934 ProSiteProfiles Trp-Asp (WD) repeats profile. 453 494 IPR001680 GO:0005515
Aev08g0552 934 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 453 487 - -
Aev08g0552 934 SUPERFAMILY WD40 repeat-like 335 661 IPR036322 GO:0005515
Aev08g0552 934 SMART WD40_4 572 611 IPR001680 GO:0005515
Aev08g0552 934 SMART WD40_4 488 527 IPR001680 GO:0005515
Aev08g0552 934 SMART WD40_4 530 569 IPR001680 GO:0005515
Aev08g0552 934 SMART WD40_4 334 373 IPR001680 GO:0005515
Aev08g0552 934 SMART WD40_4 446 485 IPR001680 GO:0005515
Aev08g0552 934 SMART WD40_4 404 443 IPR001680 GO:0005515
Aev08g0552 934 SMART WD40_4 630 669 IPR001680 GO:0005515
Aev08g0552 934 SUPERFAMILY Taf5 N-terminal domain-like 45 188 IPR037264 -
Aev08g0552 934 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 579 614 - -
Aev08g0552 934 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 411 443 - -
Aev08g0552 934 CDD TAF5_NTD2 57 189 IPR007582 -
Aev08g0552 934 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 537 574 - -
Aev08g0552 934 SUPERFAMILY MIR domain 750 912 IPR036300 -
Aev08g0552 934 Gene3D - 492 570 IPR015943 GO:0005515
Aev08g0552 934 ProSiteProfiles Trp-Asp (WD) repeats profile. 579 620 IPR001680 GO:0005515
Aev08g0552 934 PRINTS G protein beta WD-40 repeat signature 430 444 IPR020472 -
Aev08g0552 934 PRINTS G protein beta WD-40 repeat signature 598 612 IPR020472 -
Aev08g0552 934 PRINTS G protein beta WD-40 repeat signature 514 528 IPR020472 -
Aev08g0552 934 PANTHER CANNONBALL-RELATED 1 666 - -
Aev08g0552 934 CDD WD40 342 664 - -
Aev08g0552 934 Pfam WD40 associated region in TFIID subunit, NTD2 domain 55 183 IPR007582 -
Aev08g0552 934 ProSiteProfiles Trp-Asp (WD) repeats profile. 495 536 IPR001680 GO:0005515
Aev08g0552 934 ProSiteProfiles MIR domain profile. 811 866 IPR016093 -
Aev08g0552 934 ProSitePatterns Trp-Asp (WD) repeats signature. 360 374 IPR019775 -
Aev08g0552 934 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID 1 666 IPR037783 -
Aev08g0552 934 ProSiteProfiles MIR domain profile. 869 922 IPR016093 -
Aev08g0552 934 ProSiteProfiles Trp-Asp (WD) repeats profile. 537 578 IPR001680 GO:0005515
Aev08g0552 934 Gene3D - 312 491 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev08g0552 Aev-Chr8 3126826 3134713 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev08g0552 325 633 Miscellaneous Gene Families AT5G08390 23.151 3.24e-18 88.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev08g0552 K03130 - gmx:100781563 1178.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev08g0552 08 3126826 3134713 Aev08g0552 08 3126826 3134713 ECH