Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0571 ATGGCGTCCACGGACGGAGAGCTTGAGAAACAGCTCATGGAAGCTGGGAACAAGCTTTTGGTGCCCCCGGCTTCTGTCGACGAACTTCTCCCGCTGCTTGACCAAGTTGAGAATTGTCTTTTAAAGGTGGAACAGTCGCCTTCCATGTCGATGCAAAATGCCCTTTCAGCATCGCTGAAGGCGTTGGTGACAGATCAACTTCTGAGACATTCTGATATTGATGTGAAAGTGGCAGTTGCAGCTTGCATCAGTGAAATTACAAGAATTACTGCACCAGATGCCCCATATGATGATGACCAAATGAAGGAGATCTTTCAGTTGATTGTATCATCATTTGAAAAATTATCTGACAGATCGAGCCGATCATATGATAAGAGGACCTCGATTCTTGAAACTGTTGCAAAGGTCAGGTCTTGCGTGGTAATGCTGGATCTTGAGTGTGATGCACTGATTATTGAAATGTTCCAGCATTTCCTCAATGCAATAAGGGATGATCATCCAGAAAATGTCTTTACATCCATGGAGACAATTATGACCCTTGTCTTAGAAGAAAGTGAAGACATTCCAACAGAGCTACTCTCTCCTATCTTGGCTAGCATAAAGAAGGACAATCAGGAGGTCCTGCCCATTGCTCGGAAACTGGGGGAGAAAGTTTTTGAAAACTGTGCTAATAAGCTTAAACCTTGCCTGATGCAAGCAGTAAAATCCTTGGGCATTTCTTTAGATGATTACAGCAAGGTAGTTTCTTCTATATGCCAAGGAACATCTAGTACTGCTGATCAGAATGATGACGGTGTTCCAGAGCAGAATGATGACAGTGGTCCACAGCAGAATGATGATAGTGCTCCAGAGCAGAAAGATGACAACATTGCTGGCAAAAATACAGTTGAAGAGAGCCAGTTGTTAAGGGCATCTTCGGATGAGGCAGCCCAGGTAGATAAAGAGATTTCAATTGAAGCAGCCTGTCCTGGAGAAGCAGATCCAGCAATGGATAGATCTCCTAAGTCAGTTATGAGCAATGGCATCAAACAGGCTGCGAATGATGACTCTTTAGTGGATTCAAACTCTTCAAAGAAGCCTGATTATGGTACTAATCAGTCCAAAAGTAGCAAAGTACCAAGTGAGGTTGAACTTGATAGTTTGGATGTTGGAAAGGTAGAACAAGAATCTAAGCCAGAACAAACTACTAAGAAAAGAGGAAGAAAGCCAAATGCTTCAATGAATTTGATAGAACCTTCTGATTCTCGTGTTAGCAGTGAGGAGGAGTCTGAGAAACTGTCAGACCATAAAAAAAATCAAAGCAAGGCAGGTCATGATGCCCCTTGTGAGGACCCTCCATCTATGGAGGCAGCTGTGCCTTCAGAAAATGAAAAGATGACTGCTACTCAGCTTTCCTCACCAAAGGCATTGGAGAATGAGTCTTCATATGTTGCTTCTCCATCTCCAAGCCGGAGCCTACCTGATGAGAGTCATGTTAGGAAGGTTGGACGTCCAAGGAAGAAAGACAACTTGAATCAGGAAGTGGGGAAAAGGCGACCTGGGAAAAGGGCAAGTTCTGGGATTACTGAGGAGGATAAAACTTCGGCCACCATGACTGACTCAGTGGAAAACCCACTGAAGAAGTCGGGTAAGAAAGTGGACACAAGCAAGAATGAGGATGGATCCTCTTTAAAGCCTCAGGAAGATAGGAAAAAACGGGGGCGTGGTAAAGCTGTTTTGGAGAAAGAAATGACAAAATTCTTGTCTAAAGATGATGAAAAAGAAATGCTTTCTTCCCCAAAGTCTGCTGGAAAATCAGTAAAAGATGAAAGTCATTTAGAGGAAACCCCTAAGATGCTTTCTAAGGGAAAGCATACTTCTGGAAAGCGGAAAGCATCTGATACTGTAGATTTTGGTGAGAATCTGGTTGGTTCGAGGATTAAAGTTTGGTGGCCGAAAGATCAAATGTATTATGAAGGTGTTATTGATTCTTTTGATTCTGAGAAAAAGAAGCATAAGGTTCTGTATGTTGATGGTGATGAAGAGATACTAAATCTGAAAAAGGAAAAGTTTGATTTCGTCACTATGTCGGATGGGGAAGAAGCAACTCAGACTCCAAGTCTGGATGGCTCTGAAATGCGTCAGAAGAAGAAAGCAAAGTTTTCTGATGTGCCATCTAAGCAAGGAAAGATGGATGCTTCACCTAAAAAGGGTGGAGGAGCTTCCTCCAGCAAATCCAAAGTTTCAGTCACAAAATCCGGTCGGAAATCCAGAGACAGTGGTAAAATTGATGGAAAATCCAAGGAGGACAGCTCGAAGAATGTTGGTAAATCTGACGATGAAAACAGTGGTAATCGCAAGGATCAAAAGCTTAAAGGTGGTGGTAAATTAATATATGATTCTCCCAAAACAGCCAGCAAATCCAAGGATCAAGATGCTAATGTACCCAAGATGACTGGCAAATCCAAGCAAGACAGCTCAAAAACTGTCTCCAAATCCAAGAGTCAACCACTCAAAAGTGGTAGCAGATCTAATGCTAATGGTAGTAGCAAGGGGAAATCCAGTTCGGCTAAAGGGAAAGAAACTGTGGATGTGAAGGAGAAATCTCCAGATTCCGGGAAATCATTTGAAAGTGCCAAAGGAAAATCACAAGAAACATTGAAGGAGCAGGAAAGTGAGACAAAGAGTGGAAAGAAGCGGCGAAGAGCAGTGAAGAGCTAA 2700 0.427 MASTDGELEKQLMEAGNKLLVPPASVDELLPLLDQVENCLLKVEQSPSMSMQNALSASLKALVTDQLLRHSDIDVKVAVAACISEITRITAPDAPYDDDQMKEIFQLIVSSFEKLSDRSSRSYDKRTSILETVAKVRSCVVMLDLECDALIIEMFQHFLNAIRDDHPENVFTSMETIMTLVLEESEDIPTELLSPILASIKKDNQEVLPIARKLGEKVFENCANKLKPCLMQAVKSLGISLDDYSKVVSSICQGTSSTADQNDDGVPEQNDDSGPQQNDDSAPEQKDDNIAGKNTVEESQLLRASSDEAAQVDKEISIEAACPGEADPAMDRSPKSVMSNGIKQAANDDSLVDSNSSKKPDYGTNQSKSSKVPSEVELDSLDVGKVEQESKPEQTTKKRGRKPNASMNLIEPSDSRVSSEEESEKLSDHKKNQSKAGHDAPCEDPPSMEAAVPSENEKMTATQLSSPKALENESSYVASPSPSRSLPDESHVRKVGRPRKKDNLNQEVGKRRPGKRASSGITEEDKTSATMTDSVENPLKKSGKKVDTSKNEDGSSLKPQEDRKKRGRGKAVLEKEMTKFLSKDDEKEMLSSPKSAGKSVKDESHLEETPKMLSKGKHTSGKRKASDTVDFGENLVGSRIKVWWPKDQMYYEGVIDSFDSEKKKHKVLYVDGDEEILNLKKEKFDFVTMSDGEEATQTPSLDGSEMRQKKKAKFSDVPSKQGKMDASPKKGGGASSSKSKVSVTKSGRKSRDSGKIDGKSKEDSSKNVGKSDDENSGNRKDQKLKGGGKLIYDSPKTASKSKDQDANVPKMTGKSKQDSSKTVSKSKSQPLKSGSRSNANGSSKGKSSSAKGKETVDVKEKSPDSGKSFESAKGKSQETLKEQESETKSGKKRRRAVKS* 900
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0571 899 Pfam Sister chromatid cohesion protein PDS5 protein 27 232 - -
Vvi4g0571 899 MobiDBLite consensus disorder prediction 801 849 - -
Vvi4g0571 899 MobiDBLite consensus disorder prediction 687 899 - -
Vvi4g0571 899 FunFam Binding protein 631 683 - -
Vvi4g0571 899 MobiDBLite consensus disorder prediction 337 374 - -
Vvi4g0571 899 MobiDBLite consensus disorder prediction 255 292 - -
Vvi4g0571 899 MobiDBLite consensus disorder prediction 523 537 - -
Vvi4g0571 899 MobiDBLite consensus disorder prediction 415 438 - -
Vvi4g0571 899 MobiDBLite consensus disorder prediction 318 626 - -
Vvi4g0571 899 MobiDBLite consensus disorder prediction 874 891 - -
Vvi4g0571 899 MobiDBLite consensus disorder prediction 255 280 - -
Vvi4g0571 899 CDD Tudor_Agenet_AtEML-like 636 684 - -
Vvi4g0571 899 MobiDBLite consensus disorder prediction 378 400 - -
Vvi4g0571 899 Gene3D - 632 684 - -
Vvi4g0571 899 PANTHER ANDROGEN INDUCED INHIBITOR OF PROLIFERATION AS3 / PDS5-RELATED 323 855 IPR039776 GO:0007064
Vvi4g0571 899 MobiDBLite consensus disorder prediction 745 787 - -
Vvi4g0571 899 SUPERFAMILY Tudor/PWWP/MBT 634 676 - -
Vvi4g0571 899 MobiDBLite consensus disorder prediction 704 718 - -
Vvi4g0571 899 MobiDBLite consensus disorder prediction 487 522 - -
Vvi4g0571 899 MobiDBLite consensus disorder prediction 538 626 - -
Vvi4g0571 899 MobiDBLite consensus disorder prediction 850 868 - -
Vvi4g0571 899 SUPERFAMILY ARM repeat 22 264 IPR016024 -
Vvi4g0571 899 MobiDBLite consensus disorder prediction 456 486 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0571 Vvi-Chr4 5373067 5390453 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0571 - - vvi:100260975 1679.46