Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g00396 ATGGGCTTCTTCGGCAGCTTGATCATTGGCATCCTTATTGGTGTTGGCTTGATCGTCGCTTTTGCTCGTTATCAAAGTAACAGAGCCAGGCATCGCTCCGATTTGGCGAAGACAATCGCAGCTTTTGCGAGAATGACAGTGGAAGATTCAAGAAAAATTCTCTCACCAAAGTATTATCCACCCTGGGTTTTAAATTGGCTTAATACACAACTCGAGAAAATTTGGCCCTATGTTAATGAGGCAGCATCGGAGTTGATAAGAAGCAATGTAGAACCCATTCTCGAACAATATAGGCCAGTTGTTTTATCTGCAATCAAATTTTCCAAGTTGACTCTTGGTACAGTTGCTCCAAAATTTACAGGCATATCAATTGTTGAAGAGGAAAGTGGGACTGGTAGAGTGACCATGGAGATAGAAATGCAGTGGGATGGTAACCCAAATATCGTTCTTGATATTAAAACCCGAGTTGGTGTTTCACTACCTATACAGGTAAAAAATATTGGATTCACTGGGGTTTTCAGGTTGATCTTCAAACCACTAGTAGGTGAATTTCCTGGTTTTGGAGCAGTTTGCTATTCCTTGAGAGAAAAGAAAGATCTGGATTTTACTCTTAAGGTCATTGGTGGGGATATATCTTCTCTCCCAGGGATATCTGATGCTTTAGAGGAAACAATTCGAGATGCTATTGAAGATTCTATAACATGGCCAGTACGCAAGATTATACCTATAATACCAGGGGATTACAGTGATCTGGAATTGAAACCAGTTGGAACACTAGAAGTGAAGTTAGTGCAAGCGAAGGACTTGATGAATAAAGATCTGATCGGCAAATCCGATCCTTATGCTGTGTTATTTGTACGTCCGCTTCGTGACAGAACCCAAACCAGCAAAACTATTAATAACCAATTAAATCCAGTATGGAACGAGCACTTTGAGTTCATTGTTGAGGATGTATCCACACAGCACTTGACTATTAGAGTTTTTGATGATGAAGGCCTTCAGGCTTCTCAGCTTATTGGTTGTGCGCAAGTTCAGCTCAAGGACCTTGAACCTGGTAAAGTGAAGGATGTATGGTTGAAACTAGTTAAGGATTTGGAGGTTCATAGAGACAATAAATACAGGGGTGAGGTGCAACTGGAACTCTTGTACTGCCCATATGGAGTTGAGAACATCTTTAAAAACCCTTTCGACCCAGATTACTCATTAACCACATTCGAGAAAGTCCTTAAGAATGAGGAAGACGCTAATGAGCTTCGAAGATCAGGATCAAAGAGGAAAAGTAACGTGATTGTAAGAGGGGTATTATCTGTGACGGTGATATCTGCTGAAGACTTACCATCAATGGACCTCATTGGCAAGTCAGACCCTTATGTGGTTCTCAGATTGAAAAAAACCGGGAAAAAACTCAAGACGAGGGTTGTAAATGAAAGCTTAAATCCAGTTTGGAATCAAACATTTGACTTTGTTGTGGAGGATGCTTTACATGACATGCTAGTTCTTGAAGTCTGGGATCATGATATTTTTGGGAAGAACAAAATTGGAAGAGTGATAATGACACTCACGAAGGTCCTCTTAGAAAGGGAAGTTCAAGAGACATTTCCCATAGATGGTTCTGAAACAGGGAAGCTGAATTTGCATCTCAAGTGGACACCACAGCATATGTATCGGAATTCTTA 1676 0.4063 MGFFGSLIIGILIGVGLIVAFARYQSNRARHRSDLAKTIAAFARMTVEDSRKILSPKYYPPWVLNWLNTQLEKIWPYVNEAASELIRSNVEPILEQYRPVVLSAIKFSKLTLGTVAPKFTGISIVEEESGTGRVTMEIEMQWDGNPNIVLDIKTRVGVSLPIQVKNIGFTGVFRLIFKPLVGEFPGFGAVCYSLREKKDLDFTLKVIGGDISSLPGISDALEETIRDAIEDSITWPVRKIIPIIPGDYSDLELKPVGTLEVKLVQAKDLMNKDLIGKSDPYAVLFVRPLRDRTQTSKTINNQLNPVWNEHFEFIVEDVSTQHLTIRVFDDEGLQASQLIGCAQVQLKDLEPGKVKDVWLKLVKDLEVHRDNKYRGEVQLELLYCPYGVENIFKNPFDPDYSLTTFEKVLKNEEDANELRRSGSKRKSNVIVRGVLSVTVISAEDLPSMDLIGKSDPYVVLRLKKTGKKLKTRVVNESLNPVWNQTFDFVVEDALHDMLVLEVWDHDIFGKNKIGRVIMTLTKVLLEREVQETFPIDGSETGKLNLHLKWTPQHMYRNS 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g00396 558 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 255 386 IPR035892 -
Bva10g00396 558 Gene3D C2 domain 253 391 IPR035892 -
Bva10g00396 558 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 1 557 IPR045050 GO:0008289
Bva10g00396 558 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 60 244 IPR031468 GO:0008289
Bva10g00396 558 ProSiteProfiles C2 domain profile. 238 359 IPR000008 -
Bva10g00396 558 PRINTS C2 domain signature 498 506 IPR000008 -
Bva10g00396 558 PRINTS C2 domain signature 476 489 IPR000008 -
Bva10g00396 558 PRINTS C2 domain signature 450 462 IPR000008 -
Bva10g00396 558 Gene3D C2 domain 416 552 IPR035892 -
Bva10g00396 558 Pfam C2 domain 433 535 IPR000008 -
Bva10g00396 558 Pfam C2 domain 257 361 IPR000008 -
Bva10g00396 558 SMART C2_3c 434 532 IPR000008 -
Bva10g00396 558 SMART C2_3c 258 358 IPR000008 -
Bva10g00396 558 CDD C2 435 531 - -
Bva10g00396 558 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 429 552 IPR035892 -
Bva10g00396 558 ProSiteProfiles C2 domain profile. 414 533 IPR000008 -
Bva10g00396 558 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 65 243 IPR039010 -
Bva10g00396 558 CDD C2 259 361 - -
Bva10g00396 558 PANTHER SYNAPTOTAGMIN-4 1 557 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g00396 Bva-Chr10 4339223 4344683 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva10g00396 259 550 Lipid Metabolism Gene Families AT4G00700 24.679 1.03e-07 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva10g00396 - - gmx:100787972 888.641
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva10g00396 10 4339223 4344683 Bva10g00396 10 4339223 4344683 ECH