Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy18g2725 ATGGGATTCATCGGCGGGATGATCATCGGCATCGCCTTCGGCGTTGGATTGATCGTTGCTTTTGCTCGCTACGAAAGCATTCGATCCAAGCGTCGTTCTGATTTGGCGAAGACGGTGGCGATGTTTGCGAGGATGACGGTGGAAGATTCTAGAGTACTTCTGCCTGGAAAGTTCTACCCTTCATGGGTTGTATTCACTAAGAGACAGAAGTTAAAATGGCTCAACACGCAACTCGACAAGATGTGGCCATTCATCAATGATGCAGCTTCGGAGTTGATAAAGAGTAGTGTGGAGCCAATTCTAGAGCAATATAAGCCAGTTATTTTGGCTTCTCTTACCTTCTCCAAGTTGACCCTTGGCACAGTGGCTCCACAATTTACCGGAATTGCCATACTTGAAGAGGAAAGTGGGCCTAATGAATTTACCATAGAGTTAGAGATGCAGTGGGATGGTGACCCCAACATTGTTCTTGATATCAAAACCAAAGTTGGCGTCGTACTTCCCATCCAGGTAAAAAATATTGGATTCACTGGGGTCTTTTGGTTGATATTCAAACCACTAGTGGATGAGTTCCCTACTTTTTCAGCTGTTTCTGTTTCATTGAGAGAAAAGAAAGATCTGGATTTTACTCTAAAAGTAGTCGGCGGTGATATATCAGCTTTACCGGGGGTATCTGATGCTATAGAGGAAACAATTCGGGATGCTATTGAAGACTCTATAACTTGGCCAATGCGCAAAGTCATACCAATTTTACCTGGGGATTACAGTAATCTGGAGTTGAAACCGGTTGGAATATTAGATGTGAAACTGGTGCAAGCAAAGGACTTAACAAATAAGGATATCATTGGTAAATCCGACCCTTTTGCTGTTCTGTTTGTAAGGCCACTTCGTGATAGAACCAAAACAAGCAAAGTAATCAACAATGACTTGAATCCAATATGGAATGAGCACTTTGAGTTCATTGTTGAAGATGCGGATACACAGCACTTGACTGTAAGAGTTTTCGATGATGAAGGCATTTCTGCTGCCGAGCTTATTGGTTGTGCCCAAATGCCTCTAAAGGAACTAGAACCTGGTAAAGTCAAGATTGTGTGGTTGAAACTGGTCAAGGATTTGGAGGTCCATAGGGATAACAAATACAGGGGTGAGGTGCACTTGGAGCTGTTGTACATCCCACATGGAACAGATGACAGCTTTAGGAACCCCTTCGACCCTGATTTCGCATTGACCATATTCGAGAAGACCCTCAAGAGTGGAACTGAACCAGAGGCTGAGGATATTACAGCACGAAAGAAGAACGTCATTGTAAGAGGTGTTCTCTCTGTGACGGTTATTTCAGCTGAAGACTTGCCAGTTGTGGACTTAATGGGCAAGGCTGATCCATTTGTTGTCCTGACGTTGAAGAAATCAGAGAAAAAACTCAAGACTAGGGTCGTAAATGAATCCTTAAATCCAGTTTGGAATCAAACATTTGACTTTGTTGTAGAGGACGGCTTACATGAAATGTTAATTGTTGAAGTCTGGGATCACGATACTTTTGGGAAGGACAAAATGGGAAAAGTGATAATGACTCTAACAAAGGTGATCTTAGAAGGGGAATATCAGGAAACGTATACACTAGAGGGAGCTAAATCTGGAAGGCTTACTTTGCATCTGAGATGGACACCACAGCACAAGTACCGGGATCCTTAG 1692 0.4303 MGFIGGMIIGIAFGVGLIVAFARYESIRSKRRSDLAKTVAMFARMTVEDSRVLLPGKFYPSWVVFTKRQKLKWLNTQLDKMWPFINDAASELIKSSVEPILEQYKPVILASLTFSKLTLGTVAPQFTGIAILEEESGPNEFTIELEMQWDGDPNIVLDIKTKVGVVLPIQVKNIGFTGVFWLIFKPLVDEFPTFSAVSVSLREKKDLDFTLKVVGGDISALPGVSDAIEETIRDAIEDSITWPMRKVIPILPGDYSNLELKPVGILDVKLVQAKDLTNKDIIGKSDPFAVLFVRPLRDRTKTSKVINNDLNPIWNEHFEFIVEDADTQHLTVRVFDDEGISAAELIGCAQMPLKELEPGKVKIVWLKLVKDLEVHRDNKYRGEVHLELLYIPHGTDDSFRNPFDPDFALTIFEKTLKSGTEPEAEDITARKKNVIVRGVLSVTVISAEDLPVVDLMGKADPFVVLTLKKSEKKLKTRVVNESLNPVWNQTFDFVVEDGLHEMLIVEVWDHDTFGKDKMGKVIMTLTKVILEGEYQETYTLEGAKSGRLTLHLRWTPQHKYRDP* 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy18g2725 563 CDD C2 440 540 - -
Ahy18g2725 563 SMART C2_3c 439 537 IPR000008 -
Ahy18g2725 563 SMART C2_3c 265 365 IPR000008 -
Ahy18g2725 563 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 70 250 IPR039010 -
Ahy18g2725 563 CDD C2 266 368 - -
Ahy18g2725 563 Gene3D C2 domain 435 561 IPR035892 -
Ahy18g2725 563 Gene3D C2 domain 260 398 IPR035892 -
Ahy18g2725 563 PANTHER SYNAPTOTAGMIN-4 1 562 - -
Ahy18g2725 563 PRINTS C2 domain signature 455 467 IPR000008 -
Ahy18g2725 563 PRINTS C2 domain signature 481 494 IPR000008 -
Ahy18g2725 563 PRINTS C2 domain signature 503 511 IPR000008 -
Ahy18g2725 563 Pfam C2 domain 438 539 IPR000008 -
Ahy18g2725 563 Pfam C2 domain 264 368 IPR000008 -
Ahy18g2725 563 ProSiteProfiles C2 domain profile. 243 366 IPR000008 -
Ahy18g2725 563 ProSiteProfiles C2 domain profile. 421 538 IPR000008 -
Ahy18g2725 563 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 434 557 IPR035892 -
Ahy18g2725 563 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 67 251 IPR031468 GO:0008289
Ahy18g2725 563 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 262 393 IPR035892 -
Ahy18g2725 563 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 1 562 IPR045050 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy18g2725 Ahy-Chr18 130696289 130703704 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy18g2725 256 555 Lipid Metabolism Gene Families AT1G51570 22.492 4.86e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy18g2725 - - gmx:100787972 935.636
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy18g2725 18 130696289 130703704 Ahy18g2725 18 130696289 130703704 ECH
Ahy18g2725 18 130696289 130703704 Ahy8g2470 8 47449688 47457211 hybridization