Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3891 ATGGGATTCATCAGCGGCATGATCATTGGTATTATGATTGGTATGATATTGGTTGTCGCTTTCGCTCGTCAAGAAAGTACTCGATCCAAGCGTCGCACAGATTTGGCAAAGACAATAGCAAAGTTTGCGAGGATGACAGTGGAGGATTCGAGAAAACTTCTACCTCCAAATTTTTATCCATCATGGGTGGTATTTACTCAAAGACAAAAGTTTAGTTCATTAAATTGGCTTAATAGCCATTTAGAAAAGATTTGGCCATTTGTCAATGAGGCAGCGACAGAATTGGTAAAAAGCAACGTCGAACCAATTCTTGAACAGTATAGGCCAGTGGTTTTGTCTTCTCTCACATTTTCAACGTTTACACTCGGTAATGTAGCTCCACAATTTACAGGAATTTCGATTATTGAAGAGGATAGTGGGCCCAATGGAGCAACAATGGAGTTTGACTTGCAGTGGGATGGTAACCCGGATATTGTTCTTGCCATTAAAACCAAAGTTGGTATTGTATTACCTGTGCAGGTAAAAAATATTGGATTCACTGGGGTTTTCAGGTTGATCTTCAAACCTCTTGTAGCTGAATTCCCTGCTTTTGGAGCCGTATGTTTTTCTCTAAGAAAAAAGAAAGCTTTGGATTTTACTCTTAAGGTTGTTGGTGGTGATATTTCAACCTTACCAGGGGTATCTGAAGCTATTGAGGAAACAATTCGAGATGCCATTGAAGACTCTATAACTTGGCCAGTACGTAAAGTCATACCAATTATACCAGGAGATTATAGTAACCTAGAATTGAAACCCGTTGGAACACTAGATGTAAAACTAGTGCAGGCAAAGAACTTATCAAATAAAGATATAATTGGAAAATCTGATCCTTTTGCTGTGGTATTTGTACGCCCACTCCGTGACAAAACCAAAACCAGTAAAATAATTAACAACCAGTTGAACCCAATATGGAATGAGCACTTTGAATTCATTATTGAAGACGAATCAACACAACACTTGACCATAAGAATCTTTGATGATGAAGGCATTCAAGCAGCTGAGCTTATTGGTTGTGCCCAAGTTTCCCTAAAGGAACTTGAGCCTGGTAAAGTTAAGGATGTATGGTTGAAATTGGTTAAAGATTTAGAGATCCACAAAGATAACAAATATAGGGGTGAGGTACACTTGGAGCTATTGTATTGCCCATATGGAGTTGAGAACACTTTTAAGAGCCCTTTTGTCCGTGATTACTCACTAACAACGTTTGAGAAGACACTGAAGAATGGAGCTAGTGATGGAGAGGAAGAAGATAACTCAATATCATCATCATCATCATCATCACGGAGGAAAAGCAACGTGATTGTAAGAGGAGTTCTATCGGTCACTGTAATTTCAGCTGAAGACTTACCAATAGTAGATTTTATGGGCAAGGCTGACCCATTTGTTGTCCTTGCATTGAAAAAATCAGAAAAGAAACAAAAGACCCGAGTTGTAAATGAAACTCTAAATCCAGTATGGAATCAAACATTTGACTTCGTTGTGGAGGATGGATTACACGACATGCTAATTGTTGAACTATGGGATCATGACACCTTTGGAAAGGAAAAAATGGGAAAAGTGATCATGACACTAACCAAGGTCATATTGGAAGGGGAATACGACGAAACATTTATTTTGGATGATGCTAAATCCGGAAAGATTAATTTGCATCTAAGATGGACTCCACAACACAAGTATCGGGAACCTTAA 1728 0.386 MGFISGMIIGIMIGMILVVAFARQESTRSKRRTDLAKTIAKFARMTVEDSRKLLPPNFYPSWVVFTQRQKFSSLNWLNSHLEKIWPFVNEAATELVKSNVEPILEQYRPVVLSSLTFSTFTLGNVAPQFTGISIIEEDSGPNGATMEFDLQWDGNPDIVLAIKTKVGIVLPVQVKNIGFTGVFRLIFKPLVAEFPAFGAVCFSLRKKKALDFTLKVVGGDISTLPGVSEAIEETIRDAIEDSITWPVRKVIPIIPGDYSNLELKPVGTLDVKLVQAKNLSNKDIIGKSDPFAVVFVRPLRDKTKTSKIINNQLNPIWNEHFEFIIEDESTQHLTIRIFDDEGIQAAELIGCAQVSLKELEPGKVKDVWLKLVKDLEIHKDNKYRGEVHLELLYCPYGVENTFKSPFVRDYSLTTFEKTLKNGASDGEEEDNSISSSSSSSRRKSNVIVRGVLSVTVISAEDLPIVDFMGKADPFVVLALKKSEKKQKTRVVNETLNPVWNQTFDFVVEDGLHDMLIVELWDHDTFGKEKMGKVIMTLTKVILEGEYDETFILDDAKSGKINLHLRWTPQHKYREP* 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3891 575 SMART C2_3c 451 549 IPR000008 -
Mtr3g3891 575 SMART C2_3c 268 368 IPR000008 -
Mtr3g3891 575 PRINTS C2 domain signature 467 479 IPR000008 -
Mtr3g3891 575 PRINTS C2 domain signature 493 506 IPR000008 -
Mtr3g3891 575 PRINTS C2 domain signature 515 523 IPR000008 -
Mtr3g3891 575 PANTHER SYNAPTOTAGMIN-4 1 574 - -
Mtr3g3891 575 CDD C2 269 371 - -
Mtr3g3891 575 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 265 396 IPR035892 -
Mtr3g3891 575 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 70 254 IPR031468 GO:0008289
Mtr3g3891 575 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 75 253 IPR039010 -
Mtr3g3891 575 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 449 568 IPR035892 -
Mtr3g3891 575 Gene3D C2 domain 447 574 IPR035892 -
Mtr3g3891 575 Gene3D C2 domain 259 395 IPR035892 -
Mtr3g3891 575 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 1 574 IPR045050 GO:0008289
Mtr3g3891 575 Pfam C2 domain 267 371 IPR000008 -
Mtr3g3891 575 Pfam C2 domain 450 550 IPR000008 -
Mtr3g3891 575 ProSiteProfiles C2 domain profile. 248 369 IPR000008 -
Mtr3g3891 575 CDD C2 452 548 - -
Mtr3g3891 575 ProSiteProfiles C2 domain profile. 429 550 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3891 Mtr-Chr3 52742333 52748415 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g3891 263 516 Lipid Metabolism Gene Families AT3G61300 24.231 1.77e-10 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3891 - - gmx:100787972 937.176
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g3891 3 52742333 52748415 Mtr3g3891 3 52742333 52748415 ECH