Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele03g0652 ATGGGCTTCATCAGTGGCATGATCATGGGCATCGCCCTTGGCCTCTCTTTGATCTTCGCTTTTGCTAGTTTCCAAAGTTACCGATCCAAACGTCGTTCCGATTTGGCGGAAGCCATCGCAGCTTTTGCCAGGATGAAGACGATGGAAGATTGCAGAAGAATTGTCCCCCCCGAGTCGTGTCCCCCCTGGTTAAATTGGCTCAATACGCATCTCCAGAAAATCTGGCCTTATGTTAACGAGGCGGCATCAGAGTTGATAAGAAGCAATGTGGAACCCATTCTTGATCAATACACACCCAAAATCCTGTCTTCAATCACCTTCTCCAAGTTGACTCTTGGTACTGTAGCACCTCAATTCACAGGAGTGGCCATTGTTGAAGAAGAAAGTGGCGCTGATGGAGTGACTATGGAATTGGACATGCAGTGGGATGGTAACCCCACTATTGCATTTGATGTTAAAACTCGAGTTGGCGTTGTAATACCTGTTAAGGTAAAAGATATTGGATTCACTGGCGTTTTCAGGCTCATCTTCAAACCATTAGTAGATGAGTTCCCTTCTTTTGGAGCTGTCTGTTATTCCTTGAGAGAAAAGAAACATCTGGACTTTACTCTTAAGGTTTCTGGTGGTGATATTTCAACTCTCCCAGGCGTATCTGATGCTATAGAGGAAACAATTCGAGATGCTATTGAGGATTCTATAACCTGGCCAGTACGCAAAATTATACCAATTATACCAGGGGATTACAGCTTCCTTGAGCTAAAACCAGTTGGAATACTAGAAGTAAAACTAGTGCAAGCAAAGGACTTGGCAAATAAAGATCTGATTGGCAAATCCGATCCTTTTGCTACTTTATTCGTACGCCCTCTTCGTGACACAGTCCAAAACAGCAAAACAATCAACAACGAGCTGAATCCAGTATGGAACGAGAACTTCGAGTTCACCGTGGAAGATGCATCAACTCAGCACTTGACTGTGAGAATTTTTGATGATGAAGGCGTTGGGGCTGATCAGCTCATTGGGTGCGCCCAAGTGCCATTAAAGGACCTTCAACCTGGAAAAGTTGAGATCTTCTGGTTGAAACTGGTCAAGGATTTGGAGGTCCAAAGAGACCAAAAATACAGGGGTGAGGTTCACTTGGAGTTATTGTACTGTCCATTTGGTGTTCAAAGCAACTTCACAAACCTGTTTAGTGGTAGCTTTGGGCTGACCACTTTCGAGAAGACGATTAAGAGTTCATCTGATCAGACACAGGATGGTGATGTTAACAAATCAAACAAAAAATATGTGATAGTAAGAGGAGTTCTATCTGTGACAGTGATATCAGCTGAAGACTTACCAGATATGGACTTACTGGGAAAAACTAACGCTTATGTAGAGCTCATGTTGAAGAAAGCAGACCAAAAACACAGGACCAGGGTTGCAACTTCAGGAGTAAACCCTGTTTGGAATCAAACATTTGACTTTGTCGTGGAGGATGCGTTACATGAAATGCTAATTCTTGAAGTCTGGGATCAAGATCTCATCGGGAAGGATAAAATTGGAAGGGTCACGATGACACTGACGAGGGTAATCCTAGAAAAGGAAGTTCAGGATAGTTTTGCGTTAGATGGAACTAAATCTGGAAAATTAAACCTGCATCTTCGCTGGACTCCACAACTCATGTATCGAGATCCTTGA 1677 0.4323 MGFISGMIMGIALGLSLIFAFASFQSYRSKRRSDLAEAIAAFARMKTMEDCRRIVPPESCPPWLNWLNTHLQKIWPYVNEAASELIRSNVEPILDQYTPKILSSITFSKLTLGTVAPQFTGVAIVEEESGADGVTMELDMQWDGNPTIAFDVKTRVGVVIPVKVKDIGFTGVFRLIFKPLVDEFPSFGAVCYSLREKKHLDFTLKVSGGDISTLPGVSDAIEETIRDAIEDSITWPVRKIIPIIPGDYSFLELKPVGILEVKLVQAKDLANKDLIGKSDPFATLFVRPLRDTVQNSKTINNELNPVWNENFEFTVEDASTQHLTVRIFDDEGVGADQLIGCAQVPLKDLQPGKVEIFWLKLVKDLEVQRDQKYRGEVHLELLYCPFGVQSNFTNLFSGSFGLTTFEKTIKSSSDQTQDGDVNKSNKKYVIVRGVLSVTVISAEDLPDMDLLGKTNAYVELMLKKADQKHRTRVATSGVNPVWNQTFDFVVEDALHEMLILEVWDQDLIGKDKIGRVTMTLTRVILEKEVQDSFALDGTKSGKLNLHLRWTPQLMYRDP 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele03g0652 558 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 60 244 IPR031468 GO:0008289
Lele03g0652 558 ProSiteProfiles C2 domain profile. 415 533 IPR000008 -
Lele03g0652 558 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 255 386 IPR035892 -
Lele03g0652 558 Gene3D C2 domain 415 552 IPR035892 -
Lele03g0652 558 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 1 549 IPR045050 GO:0008289
Lele03g0652 558 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 65 243 IPR039010 -
Lele03g0652 558 Pfam C2 domain 433 531 IPR000008 -
Lele03g0652 558 Pfam C2 domain 257 361 IPR000008 -
Lele03g0652 558 ProSiteProfiles C2 domain profile. 238 359 IPR000008 -
Lele03g0652 558 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 426 553 IPR035892 -
Lele03g0652 558 FunFam Extended synaptotagmin-2 412 553 - -
Lele03g0652 558 SMART C2_3c 258 358 IPR000008 -
Lele03g0652 558 SMART C2_3c 434 532 IPR000008 -
Lele03g0652 558 CDD C2 435 531 - -
Lele03g0652 558 CDD C2 259 361 - -
Lele03g0652 558 Gene3D C2 domain 253 392 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele03g0652 Lele-ChrLele03 3826537 3829315 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele03g0652 259 550 Lipid Metabolism Gene Families AT1G51570 23.385 6.68e-08 53.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele03g0652 03 3826537 3829315 Lele25g0631 25 3981205 3983952 CCT
Lele03g0652 03 3826537 3829315 Lele26g0642 26 4077546 4079954 CCT
Lele03g0652 03 3826537 3829315 Lele27g1457 27 20701572 20704112 CCT
Lele03g0652 03 3826537 3829315 Lele28g0626 28 3994453 3996857 CCT
Lele03g0652 03 3826537 3829315 Lele03g0652 03 3826537 3829315 ECH
Lele01g0653 01 3821234 3824028 Lele03g0652 03 3826537 3829315 hybridization
Lele02g0640 02 3833514 3836114 Lele03g0652 03 3826537 3829315 hybridization