Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03972 ATGGGATTCATCAGTGGCATGTTCATTGGTTTCACAATCGGTATCCTATTGATCATCGCTTTCGCTCGTCAAGAAAGCACTCGGTCCAAACGCCGCACTGATTTGGCAAAGACGATAGCAAGGTTTGCAAGGATGACGACAAAATTAAATTGGCTTAATGTTCAACTACAAAAGATTTGGCCGTTCGTTGATGAGGCAGCTTCCGAATTGATAAGAAACAATGTTGAACCCATTCTTGAACAATATAGGCCAGTGATTTTGTCTTCTCTCACATTTTCCAAGTTGACACTTGGTAATGTAGCTCCACAATTTACAGGGATTTCAATTATTGAAGAGGATAGTGGACCTAATGGAATCACAATGGAGTTTGACATGCAATGGGATGGTACCCCAAATATTGTTCTAGACATTAAAACCAAAGTTGGTGTGGTACTTCCTGTGCAGGTAAAAAATATTGGATTCACTGGGGTTTTCAGGTTGATCTTCAAACCTCTAGTAAATGAATTCCCTGCTTTTGGAGCTGTCTGTTTTTCTCTAAGAGAAAAGAAAGCTTTGGATTTTACTCTTAAGGTGGTTGGTGGCGATATTTCGTCTTTACCAGGGATATCTGATGCTATAGAGGAAACAATTAGAGATGCTATTGAAGACTCTATAACTTGGCCAGTACGCAAAATTATACCAATTATACCAGGAGATTACAGTAACCTAGAATTGAAACCAATTGGAATACTAGATGTAAAGTTAGTGCAAGCAAAGAACTTAGCAAATAAAGATATTATTGGGAAATCTGATCCTTATGCTGTTGTATTTGTACGCCCACTTCGCAACAAAACCAAAACCAGTAAAACAATAAGCAACCAATTGAACCCAATATGGAATGAACACTTTGAATTCGTTATTGAAGATGCATCAACACAACACTTGACCATAAGAATCTTCGACGACGAAGGAATCCAAGCAGCAGAGCTTATTGGTTGCGCCCAAGTTTCCTTAAAGGACCTTGAACCTGGTAAAGTCAAGGATGTATGGTTGAAGTTGGTTAAGGATTTAGAAATCCAGAGAGATAACAAATATAGGGGTGAGGTGCACTTGGAGCTCTTGTACTGTCCACATGGAGTTGAGAACACTTTTAAAAGCCCTTTTTCTCCTGATTATAATTTAACCACGTTTGAGAAGACTCTCAAGAGTGGATCTAGTGACTTAGAGGACGATGATATTTCAATATCATCATCACGATCATCGTCACGACCATCATCACAATCATCGTCGCGAAGGAGAAACAGTGTGATTGTAAGAGGAGTTTTATCAGTCACTGTAATTTCAGCTGAAGATTTGCCAGTAGTTGATTTCATGGGCAAGGCCGATCCATTTGTTGTCCTTTCATTGAAAAAATCAGAAAAGAAAGTCAAAACTAGAGTTGTAAATGAAACCTTAAATCCAGTATGGAATCAAACATTTGACTTTGTTGTGGAGGATGGTTTACACGACATGTTAATTGTTGAACTTTGGGATCATGATACATTTGGCAAGGAAAAAATGGGGAAAGTGATCATGACACTAACAAAGGTGATCTTAGAAGGGGAATACCACGAAACATTTATTTTGGATGATGCCAAATCTGGAAAGATTAATTTGCATTTAAGGTGGACAGCACAACACAAGTACAGGGAACCTTAA 1677 0.3846 MGFISGMFIGFTIGILLIIAFARQESTRSKRRTDLAKTIARFARMTTKLNWLNVQLQKIWPFVDEAASELIRNNVEPILEQYRPVILSSLTFSKLTLGNVAPQFTGISIIEEDSGPNGITMEFDMQWDGTPNIVLDIKTKVGVVLPVQVKNIGFTGVFRLIFKPLVNEFPAFGAVCFSLREKKALDFTLKVVGGDISSLPGISDAIEETIRDAIEDSITWPVRKIIPIIPGDYSNLELKPIGILDVKLVQAKNLANKDIIGKSDPYAVVFVRPLRNKTKTSKTISNQLNPIWNEHFEFVIEDASTQHLTIRIFDDEGIQAAELIGCAQVSLKDLEPGKVKDVWLKLVKDLEIQRDNKYRGEVHLELLYCPHGVENTFKSPFSPDYNLTTFEKTLKSGSSDLEDDDISISSSRSSSRPSSQSSSRRRNSVIVRGVLSVTVISAEDLPVVDFMGKADPFVVLSLKKSEKKVKTRVVNETLNPVWNQTFDFVVEDGLHDMLIVELWDHDTFGKEKMGKVIMTLTKVILEGEYHETFILDDAKSGKINLHLRWTAQHKYREP 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03972 558 CDD SMP_SYT 48 228 - -
Vifa2g03972 558 ProSiteProfiles C2 domain profile. 223 344 IPR000008 -
Vifa2g03972 558 SMART C2_3c 243 343 IPR000008 -
Vifa2g03972 558 SMART C2_3c 434 532 IPR000008 -
Vifa2g03972 558 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 1 549 IPR045050 GO:0008289
Vifa2g03972 558 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 240 371 IPR035892 -
Vifa2g03972 558 CDD C2 435 531 - -
Vifa2g03972 558 Gene3D C2 domain 417 552 IPR035892 -
Vifa2g03972 558 MobiDBLite consensus disorder prediction 410 425 - -
Vifa2g03972 558 Gene3D C2 domain 238 376 IPR035892 -
Vifa2g03972 558 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 428 550 IPR035892 -
Vifa2g03972 558 FunFam Plant synaptotagmin 237 379 - -
Vifa2g03972 558 FunFam Extended synaptotagmin-2 412 553 - -
Vifa2g03972 558 CDD C2 244 346 - -
Vifa2g03972 558 Pfam C2 domain 433 531 IPR000008 -
Vifa2g03972 558 Pfam C2 domain 242 346 IPR000008 -
Vifa2g03972 558 PRINTS C2 domain signature 498 506 IPR000008 -
Vifa2g03972 558 PRINTS C2 domain signature 476 489 IPR000008 -
Vifa2g03972 558 PRINTS C2 domain signature 450 462 IPR000008 -
Vifa2g03972 558 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 46 228 IPR039010 -
Vifa2g03972 558 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 45 229 IPR031468 GO:0008289
Vifa2g03972 558 ProSiteProfiles C2 domain profile. 415 533 IPR000008 -
Vifa2g03972 558 MobiDBLite consensus disorder prediction 397 425 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03972 Vifa-Chr2 1167892259 1167895170 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03972 238 499 Lipid Metabolism Gene Families AT3G61300 24.254 5.08e-11 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03972 - - gmx:100787972 872.463
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g03972 2 1167892259 1167895170 Vifa2g03972 2 1167892259 1167895170 ECH