Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g2076 ATGGAGGAAGATGAAATTGCAGGGTACGTGACAGCGTACCTGAAGAAGAAAGGGTTCACGCAAACGGAGAAGATCTTCCAGGAAGAATTCCAAACCAACAAGACCAATTCTTCCCCTCTCGAACCAGACATTGCCAAGCACATTCTCTCTTTCTCTCAGTTGGAGAGTGGCCCTGCAAGATTTCACGATGGTTATAGCAGACTCAGATCATGGACTCACTGTTCCCTAGATTTGTACAAGCATGAGTTGCTTCGTGTGCTTTATCCAGTGTTTATCCATTGCTTTATGGATCTTGTTGCAAAAGGGCATGTTCAGGAAGCTCGGCACTTCTTCAATACCTTCCGTGAAGATCATGAAATGATGCACTTAAGGGACCTGCAAAAGTTGGAAGGTGTTCTTTCCCCCACTCATCTGGAGGAAATGGAATTTGCCCATTCGCTTAGGCAGAGTAAATTCAACATAAAAATATGTGAGTATTCCTATGAGCTTCTATTGCAACATCTACACAGTACACAATCCACTACTATACTTGGTATTATCAATGAGCATATTAACTTCCAAGTTACTCCTGGACAACCTAGCTCAATTGTTGATGATCCTGAGGCTGTCACCCTTAGTGGAAGCAGCCAAGATGCAGCAAACCAGATAAATCAGAAAGAAATACATTGGGGGTTGCTTGAAGACTCTCTGGAAGAGCGACTGGAAAAGGCTAGCTCCTTGCTTTCGGATTCTGAGAAGGGTGAAGGGGAAGCAAAAGAGGGGGAGACAGAGGAGAATAAGAAACGACCAGTTGAAGGAGGAAAGCAAGGTGCCTCGATCAAAAAGGTAAAGAAGGACAAGGGCGGAAGTGCAACAGGGAAAAACACCAAAGCTGAAGTTAATACTGTATCTGCAGCTCCGCGAGTTAAACCAGAACTTCCCATGCCCATAATCCCGACTGAGGTGGAACAGTCAATCCTTGAAGATTTGAGGAACCGTGTACAACTTAGCAGTGTAGCACTGCCATCAGTTAGCTTTTATACTTTTCTAAATACGCATAATGGTTTAAGCTGTTCATCAATATCCCATGATGGATCATTGGTTGCTGGAGGATTTTCTGATTCATCACTGAAGGTTTGGGATATGGCAAAGCTTGGAGAACAGACTGCCAGTTCTCTTTCACAGGATGAGAATGATACATCACAAAATCCACAAATGGGGCAAAGTGGTGGCGGGAAAAGGCAGTATACATTGTTTCAAGGTCATTCAGGGCCAGTTTATGCAGCCTCTTTTAGTCCAGTTGGAGAGTTTATTCTTTCTTCCTCAGCAGACTCAACTATTCGATTATGGAGCACGACTTACAATGCTAATCTTGTTTGTTACAAAGGTCACAATTACCCTGTCTGGGATGTTCAGTTTAGTCCTGTAGGGCATTATTTTGCCAGCTCTTCGCATGACAGAACTGCTAGGATTTGGTCGATGGAAAGGATACAGCCGTTAAGAATAATGGCAGGGCACTTGTCTGATGTTGATTGTGTGCAATGGCATGCCAACTGCAACTACATTGCAACTGGTTCAAGTGACAAAACAGTTCGACTATGGGATGTTCAGAGTGGGGAGTGTGTCCGAGTTTTTGTTGGTCACAGGAGTATGATCTTGTCATTGGCAATGTCTCCTGATGGACGGTATATGGCATCTGGCGATGAAGATGGCACGATCATGATGTGGGACCTCTCTAGTGGCCGCTGTCTCACACCCTTGATTGGTCACACATCATGTGTCTGGTCACTTGCTTTCAGTTGTGAAGGTTCTGTTCTGGCATCTGGATCTGCTGATTGCAGTGTAAAATTATGGGATGTAAATACGAGCACTAAGGTTTCCAGGGCTGAAGAAAAAAGTGGGAATGCTAGCAGACTTAGATCACTGAAAACATTGCCCACCAAATCTACTCCAGTTTATGCTTTGCGGTTTTCTCGAAGGAATCTTCTATTTGCAGCTGGAGCTCTTGCAAAAAATGGCTAA 2001 0.4413 MEEDEIAGYVTAYLKKKGFTQTEKIFQEEFQTNKTNSSPLEPDIAKHILSFSQLESGPARFHDGYSRLRSWTHCSLDLYKHELLRVLYPVFIHCFMDLVAKGHVQEARHFFNTFREDHEMMHLRDLQKLEGVLSPTHLEEMEFAHSLRQSKFNIKICEYSYELLLQHLHSTQSTTILGIINEHINFQVTPGQPSSIVDDPEAVTLSGSSQDAANQINQKEIHWGLLEDSLEERLEKASSLLSDSEKGEGEAKEGETEENKKRPVEGGKQGASIKKVKKDKGGSATGKNTKAEVNTVSAAPRVKPELPMPIIPTEVEQSILEDLRNRVQLSSVALPSVSFYTFLNTHNGLSCSSISHDGSLVAGGFSDSSLKVWDMAKLGEQTASSLSQDENDTSQNPQMGQSGGGKRQYTLFQGHSGPVYAASFSPVGEFILSSSADSTIRLWSTTYNANLVCYKGHNYPVWDVQFSPVGHYFASSSHDRTARIWSMERIQPLRIMAGHLSDVDCVQWHANCNYIATGSSDKTVRLWDVQSGECVRVFVGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLSSGRCLTPLIGHTSCVWSLAFSCEGSVLASGSADCSVKLWDVNTSTKVSRAEEKSGNASRLRSLKTLPTKSTPVYALRFSRRNLLFAAGALAKNG* 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g2076 666 CDD TAF5_NTD2 58 190 IPR007582 -
Ahy20g2076 666 ProSiteProfiles Trp-Asp (WD) repeats profile. 412 444 IPR001680 GO:0005515
Ahy20g2076 666 SUPERFAMILY Taf5 N-terminal domain-like 47 189 IPR037264 -
Ahy20g2076 666 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 580 615 - -
Ahy20g2076 666 PANTHER CANNONBALL-RELATED 1 663 - -
Ahy20g2076 666 ProSitePatterns Trp-Asp (WD) repeats signature. 599 613 IPR019775 -
Ahy20g2076 666 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 496 533 - -
Ahy20g2076 666 MobiDBLite consensus disorder prediction 236 285 - -
Ahy20g2076 666 MobiDBLite consensus disorder prediction 191 210 - -
Ahy20g2076 666 Pfam WD40 associated region in TFIID subunit, NTD2 domain 56 184 IPR007582 -
Ahy20g2076 666 ProSiteProfiles Trp-Asp (WD) repeats profile. 580 621 IPR001680 GO:0005515
Ahy20g2076 666 CDD WD40 412 661 - -
Ahy20g2076 666 Gene3D - 212 491 IPR015943 GO:0005515
Ahy20g2076 666 ProSitePatterns Trp-Asp (WD) repeats signature. 361 375 IPR019775 -
Ahy20g2076 666 SUPERFAMILY WD40 repeat-like 336 661 IPR036322 GO:0005515
Ahy20g2076 666 Gene3D TFIID subunit TAF5, NTD2 domain 41 189 IPR037264 -
Ahy20g2076 666 Gene3D - 573 664 IPR015943 GO:0005515
Ahy20g2076 666 ProSitePatterns Trp-Asp (WD) repeats signature. 515 529 IPR019775 -
Ahy20g2076 666 SMART WD40_4 573 612 IPR001680 GO:0005515
Ahy20g2076 666 SMART WD40_4 489 528 IPR001680 GO:0005515
Ahy20g2076 666 SMART WD40_4 405 444 IPR001680 GO:0005515
Ahy20g2076 666 SMART WD40_4 447 486 IPR001680 GO:0005515
Ahy20g2076 666 SMART WD40_4 531 570 IPR001680 GO:0005515
Ahy20g2076 666 SMART WD40_4 335 374 IPR001680 GO:0005515
Ahy20g2076 666 Pfam WD domain, G-beta repeat 491 528 IPR001680 GO:0005515
Ahy20g2076 666 Pfam WD domain, G-beta repeat 574 612 IPR001680 GO:0005515
Ahy20g2076 666 Pfam WD domain, G-beta repeat 343 374 IPR001680 GO:0005515
Ahy20g2076 666 Pfam WD domain, G-beta repeat 532 570 IPR001680 GO:0005515
Ahy20g2076 666 Pfam WD domain, G-beta repeat 409 444 IPR001680 GO:0005515
Ahy20g2076 666 Pfam WD domain, G-beta repeat 451 486 IPR001680 GO:0005515
Ahy20g2076 666 ProSitePatterns Trp-Asp (WD) repeats signature. 557 571 IPR019775 -
Ahy20g2076 666 ProSiteProfiles Trp-Asp (WD) repeats profile. 538 579 IPR001680 GO:0005515
Ahy20g2076 666 ProSiteProfiles LIS1 homology (LisH) motif profile. 2 34 IPR006594 GO:0005515
Ahy20g2076 666 MobiDBLite consensus disorder prediction 236 298 - -
Ahy20g2076 666 MobiDBLite consensus disorder prediction 381 407 - -
Ahy20g2076 666 ProSiteProfiles Trp-Asp (WD) repeats profile. 496 537 IPR001680 GO:0005515
Ahy20g2076 666 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 412 444 - -
Ahy20g2076 666 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 538 575 - -
Ahy20g2076 666 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID 1 663 IPR037783 -
Ahy20g2076 666 ProSiteProfiles Trp-Asp (WD) repeats profile. 454 495 IPR001680 GO:0005515
Ahy20g2076 666 PRINTS G protein beta WD-40 repeat signature 431 445 IPR020472 -
Ahy20g2076 666 PRINTS G protein beta WD-40 repeat signature 599 613 IPR020472 -
Ahy20g2076 666 PRINTS G protein beta WD-40 repeat signature 515 529 IPR020472 -
Ahy20g2076 666 Gene3D - 492 572 IPR015943 GO:0005515
Ahy20g2076 666 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 454 488 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g2076 Ahy-Chr20 117301701 117308341 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g2076 538 665 Miscellaneous Gene Families AT5G08390 23.256 5.89e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g2076 K03130 - gmx:100805953 1194.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g2076 20 117301701 117308341 Ahy20g2076 20 117301701 117308341 ECH
Ahy20g2076 20 117301701 117308341 Ahy10g1633 10 94611822 94618428 hybridization