Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01017 ATGGAGCTAGAGATGCAGTGGGATGGCAACCCGAATATAGTTCTTGACATTAAAACCCGACTTGGTGTTGTACTTCCTGTGCAGGTAAAAAATATTGGATTCACTGGGGTTTTCAGGTTGATCTTCAAACCACTAGTAAATGAGTTCCCTGCTTTTGGAGCTGTTTGTTTTTCCTTGAGAGAAAAGAAAGATCTGGATTTTACTCTTAAGGTTATTGGTGGCGATATATCAGCTTTACCGGGGATATCTGATGCTATAGAGGAAACAATTCGAGATGCCATTGAAGACTCTATAACTTGGCCAGTACGCATAATTATACCAATTATACCAGGGGATTACAGTAACCTAGAATTGAAACCGGTTGGAACACTAGAAGTAAAACTAGTGCAAGCAAAGAACTTAACAAATAAAGATCTGATTGGGAAATCCGATCCTTATGCTGTCATGTTTGTACGGCCCCTCCGTGACAGAATCAAAACCAGTAAAATAATCAACAACCAGTTGAATCCAGTATGGAATGAGCACTTTGAGTTCATTATTGAAGATGCGTCAACGCAGCACTTGACCGTAAGAATTTTTGATGATGAAGGCATTCAGGCTTCTGAGCTTATTGGGTGTGCCCAAGTTTCGCTGAAGGAACTTCAACCTGGTAAAGTTAAGGATGTATGGCTGAAACTGGTTAAGGATTTGGAGGTCCATAGAGATAACAAATACAGGGGTGAGGTGCAGTTGGAGCTCTTGTACTGCCCATTTGGAGTTGATAACAGCTTTAAGAACCCTTTTGACCCTGATTATTCATTAACCACGTTCGAGAAGACCCTCAAGAGTGGAGCTGGTGGCGCAGAGGCTGAGGATATTTCAAAAACATCATCACGGAGGAGAAGTAACGTGATTGTAAGAGGGGTTCTATCTGTGACAGTGATTTCAGCTGAAGACTTGCCAGTAGTGGACTTAATGGGCAAGGCTGACCCATTTGTTGTCCTTGCGTTGAAAAAATCAGAAAAAAAATACAAGAGCAGGGTTGTAAATGAATCCCTAAACCCAGTTTGGAATCAAACATTTGACTTTGTTGTGGAGGATGGCTTACACGATATGTTAATTGTTGAAGTCTGGGATCATGATACGTTTGGCAAGGAGAAAATCGGAAGGGTGATCCTGACACTGACTAAGGTCATCTTAGAAGGGGAATACGATGAAACTTTTCCACTGGATGGAGCTAAATCCGGAAATATCACTATGCATCTAAAGTGGACTGCCCAGCACAAATTCCGGGATTCTTGA 1281 0.4169 MELEMQWDGNPNIVLDIKTRLGVVLPVQVKNIGFTGVFRLIFKPLVNEFPAFGAVCFSLREKKDLDFTLKVIGGDISALPGISDAIEETIRDAIEDSITWPVRIIIPIIPGDYSNLELKPVGTLEVKLVQAKNLTNKDLIGKSDPYAVMFVRPLRDRIKTSKIINNQLNPVWNEHFEFIIEDASTQHLTVRIFDDEGIQASELIGCAQVSLKELQPGKVKDVWLKLVKDLEVHRDNKYRGEVQLELLYCPFGVDNSFKNPFDPDYSLTTFEKTLKSGAGGAEAEDISKTSSRRRSNVIVRGVLSVTVISAEDLPVVDLMGKADPFVVLALKKSEKKYKSRVVNESLNPVWNQTFDFVVEDGLHDMLIVEVWDHDTFGKEKIGRVILTLTKVILEGEYDETFPLDGAKSGNITMHLKWTAQHKFRDS. 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01017 426 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 297 418 IPR035892 -
Seca4g01017 426 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 1 109 IPR031468 GO:0008289
Seca4g01017 426 Gene3D C2 domain 284 420 IPR035892 -
Seca4g01017 426 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 1 109 IPR039010 -
Seca4g01017 426 ProSiteProfiles C2 domain profile. 282 401 IPR000008 -
Seca4g01017 426 Pfam C2 domain 122 226 IPR000008 -
Seca4g01017 426 Pfam C2 domain 301 403 IPR000008 -
Seca4g01017 426 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 1 417 IPR045050 GO:0008289
Seca4g01017 426 FunFam Plant synaptotagmin 117 259 - -
Seca4g01017 426 PRINTS C2 domain signature 318 330 IPR000008 -
Seca4g01017 426 PRINTS C2 domain signature 366 374 IPR000008 -
Seca4g01017 426 PRINTS C2 domain signature 344 357 IPR000008 -
Seca4g01017 426 CDD C2 124 226 - -
Seca4g01017 426 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 120 251 IPR035892 -
Seca4g01017 426 ProSiteProfiles C2 domain profile. 100 224 IPR000008 -
Seca4g01017 426 SMART C2_3c 302 400 IPR000008 -
Seca4g01017 426 SMART C2_3c 123 223 IPR000008 -
Seca4g01017 426 Gene3D C2 domain 118 256 IPR035892 -
Seca4g01017 426 FunFam Extended synaptotagmin-2 281 421 - -
Seca4g01017 426 CDD C2 303 403 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01017 Seca-Chr4 16283381 16290237 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01017 124 419 Lipid Metabolism Gene Families AT4G00700 23.028 7.23e-12 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01017 - - gmx:100787972 750.355
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g01017 4 16283381 16290237 Seca4g01017 4 16283381 16290237 ECH