Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g00589 ATGGGATTCATCAGCGGCATGATCGTTGGTATCGCCATTGGCATCGTATTGATCGTCGCTTTCGCTCGTCAGGGAAGCGTTCGATCCAAGCGTCGCTCCGATTTGGCAAAGACGATAGCACAGTTTGCGAGGATGACAGTGGAAGATTCCAGAAAAATTTTGCCTCCTAAGTTCTATCCATCGTGGGTGGTCTTCACTCGGAGACAGAAGTTGAGTTCATATATACACTTCTTATTAAGTTGGCTTAATAGCCAAGTCGAGAAGATTTGGCCATTCGTTAATGAGGCAGCTTCAGAGTTGATAAGAACCAATGTGGAACCAATTCTTGAACAATATAGGCCGATTATTTTGTCTTCTCTCACCTTCTCCAAGTTGACCCTTGGCACTGTGGCTCCACAATTTACAGGAGTTACTATTGTTGAAGAGAATAGTGGGCCTGAGGGGGTGACTATGGATCTTGAGATGCAGTGGGATGGTAACCCGAATATCGTTCTTGACATTAAAACCCGAGTTGGTGTTGTACTTCCTGTACAGGTAAAAAATATTGGATTCACTGGGGTTTTCAGGTTGATCTTCAAGCCACTAGTGGATGAGTTCCCTGCTTTTGGAGCTGTTTGTTTTTCCTTGAAAGAAAAGAAAGATCTGGATTTTACTCTCAAGGTTATTGGTGGTGATTTATCAACTTTACCGGGGATATCTGATGCTATAGAGGAAACAATTAGAGATGCCATTGAAGACTCTATAACTTGGCCAGTACGCAAAGTTATACCAATTCTACCCGGGGATTACAGTAATCTAGAGTTGAAACCGGTTGGAAAACTAGAAGTAAAACTAGTGCAAGCAAAGAACTTAACAAATAAAGATATAGTTGGGAAATCCGATCCTTATGCTGTCATATTTGTACGCCCCCTCCGTGACAGAACCAAAACCAGTAAAATAATGAACAACCAGTTGAATCCAGTATGGAATGAGCACTTTGAATTCATTATTGAAGATGCGTCAACGCAGCACTTGACAGTAAGAATTTTCGATGATGAAGGCGTTCAGGCTTCTGAACTTATTGGCTGTGCCCAAGTTTCCTTGAAGGATCTTGAACCTGGTAAAGTCAAGGACGTATGGCTTAAGCTGGTTAAGGATTTGGAGGTCCATAGAGATAACAAATACAGGGGTGAGGTGCACTTGGAGCTCTTATACTGCCCATTTGGAGTCGAAAGTGCCATTAGAAACCCTTTTGACCCTGATTTCTCATTAACCACGTTCGAGAAGACCCTCAAGAGTGGAACGGGTGACGCAGAGGCTGAAGATCTTATAGGGTCACGTAGGAGAAACAACGTGATTGTAAGAGGGGTTCTATCTGTGACAGTGATTTCAGCTGAAGATTTGCCAGCAGTGGACTTAATGGGCAAGGCTGATCCATTTGTTGTCCTTCTGTTGAAAAAAACAGAAAAAAAACTCAAGACCAGAGTTGTAAATGAATCCCTAAACCCTGTTTGGAATCAAACATTTGATTTTGTTGTGGAGGATGGCTTACACGAAATGTTAATTCTTGAAGTCTACGATCATGATACGTTTGGCAAGGAAAAAATTGGAAGAGTGATCTTGACACTGACTAAGGTCATCTTAGAAGGGGAATACAATGAAACTTATCCTCTAGATGGAGCAAAATCGGGAAATATTTCTTTGCATTTGAAGTGGACTCCACAGCACAAGTTTCGGGATCCTTAG 1725 0.4209 MGFISGMIVGIAIGIVLIVAFARQGSVRSKRRSDLAKTIAQFARMTVEDSRKILPPKFYPSWVVFTRRQKLSSYIHFLLSWLNSQVEKIWPFVNEAASELIRTNVEPILEQYRPIILSSLTFSKLTLGTVAPQFTGVTIVEENSGPEGVTMDLEMQWDGNPNIVLDIKTRVGVVLPVQVKNIGFTGVFRLIFKPLVDEFPAFGAVCFSLKEKKDLDFTLKVIGGDLSTLPGISDAIEETIRDAIEDSITWPVRKVIPILPGDYSNLELKPVGKLEVKLVQAKNLTNKDIVGKSDPYAVIFVRPLRDRTKTSKIMNNQLNPVWNEHFEFIIEDASTQHLTVRIFDDEGVQASELIGCAQVSLKDLEPGKVKDVWLKLVKDLEVHRDNKYRGEVHLELLYCPFGVESAIRNPFDPDFSLTTFEKTLKSGTGDAEAEDLIGSRRRNNVIVRGVLSVTVISAEDLPAVDLMGKADPFVVLLLKKTEKKLKTRVVNESLNPVWNQTFDFVVEDGLHEMLILEVYDHDTFGKEKIGRVILTLTKVILEGEYNETYPLDGAKSGNISLHLKWTPQHKFRDP 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g00589 574 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 80 258 IPR039010 -
Gma06g00589 574 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 1 573 IPR045050 GO:0008289
Gma06g00589 574 CDD C2 274 376 - -
Gma06g00589 574 Gene3D C2 domain 446 572 IPR035892 -
Gma06g00589 574 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 270 401 IPR035892 -
Gma06g00589 574 PANTHER SYNAPTOTAGMIN-4 1 573 - -
Gma06g00589 574 Gene3D C2 domain 270 401 IPR035892 -
Gma06g00589 574 ProSiteProfiles C2 domain profile. 432 549 IPR000008 -
Gma06g00589 574 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 445 568 IPR035892 -
Gma06g00589 574 SMART C2_3c 273 373 IPR000008 -
Gma06g00589 574 SMART C2_3c 450 548 IPR000008 -
Gma06g00589 574 ProSiteProfiles C2 domain profile. 253 374 IPR000008 -
Gma06g00589 574 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 75 259 IPR031468 GO:0008289
Gma06g00589 574 CDD C2 451 551 - -
Gma06g00589 574 PRINTS C2 domain signature 466 478 IPR000008 -
Gma06g00589 574 PRINTS C2 domain signature 492 505 IPR000008 -
Gma06g00589 574 PRINTS C2 domain signature 514 522 IPR000008 -
Gma06g00589 574 Pfam C2 domain 272 376 IPR000008 -
Gma06g00589 574 Pfam C2 domain 449 551 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g00589 Gma-Chr6 5324834 5330066 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma06g00589 407 539 Lipid Metabolism Gene Families AT1G51570 31.387 3.87e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g00589 - - gmx:100787972 1083.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma06g00589 06 5324834 5330066 Gma06g00589 06 5324834 5330066 ECH
Gma04g00606 04 5517302 5532864 Gma06g00589 06 5324834 5330066 GST