Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Dod09g1861 | ATGGAGGAAGACGAAATAGCTGGGTACGTGACTGCGTACCTGAAGAAGAAAGGGTTCACGCAAACGGAGAAGATCTTCCACGAAGAATTCCAACACAACAAGACCACTTCCCCTCTCGAACCCGACATTGCCAACCACATCCTTGCCTTCTCCCAGTTGGAGAGTGGTCCTGATAGATTCCATGATGGGTATAGCAGACTAAGATCATGGACTTACTCTTCACTAGATTTGTACAAGCATGAGTTGCTCCGTGTGCTTTATCCTGTGTTTATACATTGCTTCATGGATCTTGTGGCAAAAGGCCATGTTCAGGAAGCCCGCAGCTTTTTCAATACCTTCCGGGAAGATCATGAAATGATGCACTTACGCGACCTTCAGAAGTTGGAAGGAGTTCTTTCCCCAATACATCTGGAGGAAATGGAATTTGCTCATTCACTTAGGCAGAGTAAATTCAACATTAAGATATGTGAGTATTCCTATGAGCTTCTGTTGCAACATCTACACAACACGCAATCGACTACTATACTTGGTATTATCAATGAGCATATTAACTTCCAAGTTACTCCTGGACAACCTAGCTCAATTGCTGATGATCCAGAGGCTGTTACTCTTACTGGAAGCAGCCAGGATGCAGCAAACCAGACAAATCAAAAAGAAATACATTGGGGGTTGCTTGAAGACTCTCTCGAAGAACGGCTGGAGAAGGCTGGGGCCTTGCCTTCTGACTCTGAAAAGGGTGAAGGGGAAGTGAAAGAGGGGGAGAATGACGAGAGTAAGAAAAGATTAATTGAAGGAGGAAAGCAAGGTGCTTCAATCAAAAAAGTGAAAAAGGACAAGGGCGGAAGTGCAACAGGCAAAAGTGCAAAACCTGAAGCTAACACTGTATCTGCAGCTCCACGAGTTAAACCGGAACTCCCCTTACCCATAATCCCAACTGAGGTAGAAAAATCTATACTTGAAGATTTGAGGAACCGTGTACAACTTAGTAGTGTTGCACTGCCATCGGTTAGCTTTTACACATTTATCAATACGCATAATGGTTTAAGCTGTTCTTCAATATCCCATGATGGATCATTGGTTGCTGGAGGATTTTCTGACTCATCACTGAAGGTTTGGGATATGGCAAAGCTTGGACAGCAGGCCAGCAGTTCTCTTTCACAGGACGAGAATGACACATCACAAAATCAACAAATGCTTGGGCAAAGTGGTGGGAGAAGGCAGTATACATTATTTCAGGGTCATTCAGGGCCAGTTTATGCAGCCTCTTTTAGTCCTGTTGGTGATTTTATTCTTTCATCATCAGCAGACTCAACAATTCGATTATGGAGCACAAATCTTAATGCTAATCTTGTTTGTTACAAAGGTCACAATTACCCTGTCTGGGATGTTCAGTTTAGTCCTGTAGGACATTATTTTGCCAGCACTTCACATGACAGAACTGCTAGGATTTGGTCCATGGAGAGGATACAGCCCTTAAGAATAATGGCAGGGCACTTGTCTGATGTTGATTGCGTGCAATGGCATGCCAACTGCAACTACATTGCCACTGGCTCCAGTGACAAAACAGTTCGACTTTGGGATGTTCAGAGTGGGGAATGTGTCCGGGTTTTCGTTGGTCACAGGAGTATGATTTTGTCTTTGGCAATGTCTCCTGATGGTCGCTATATGGCTTCTGGTGACGAAGATGGCACAATCATGATGTGGGACCTCTCTAGTGGCCGCTGTCTCACACCTTTGATTGGTCACACGTCATGCGTCTGGTCACTCGCCTTCAGCTGTGAAGGTTCTATCCTAGCATCTGGATCTGCTGATTGCACTGTAAAATTATGGGATATAAATACAAGCACAAAGGTTTCAAGGACCGAAGAAAAAAGTGGGAATGCTACGAGACTCAGATCACTGAAAACCCTGCCAACCAAATCTACTCCAGTTTATGCTTTGCGGTTTTCTCGTAGGAATCTTCTTTTTGCAGCTGGAGCTCTTGCAAAAAGTGGCTGA | 1998 | 0.4434 | MEEDEIAGYVTAYLKKKGFTQTEKIFHEEFQHNKTTSPLEPDIANHILAFSQLESGPDRFHDGYSRLRSWTYSSLDLYKHELLRVLYPVFIHCFMDLVAKGHVQEARSFFNTFREDHEMMHLRDLQKLEGVLSPIHLEEMEFAHSLRQSKFNIKICEYSYELLLQHLHNTQSTTILGIINEHINFQVTPGQPSSIADDPEAVTLTGSSQDAANQTNQKEIHWGLLEDSLEERLEKAGALPSDSEKGEGEVKEGENDESKKRLIEGGKQGASIKKVKKDKGGSATGKSAKPEANTVSAAPRVKPELPLPIIPTEVEKSILEDLRNRVQLSSVALPSVSFYTFINTHNGLSCSSISHDGSLVAGGFSDSSLKVWDMAKLGQQASSSLSQDENDTSQNQQMLGQSGGRRQYTLFQGHSGPVYAASFSPVGDFILSSSADSTIRLWSTNLNANLVCYKGHNYPVWDVQFSPVGHYFASTSHDRTARIWSMERIQPLRIMAGHLSDVDCVQWHANCNYIATGSSDKTVRLWDVQSGECVRVFVGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLSSGRCLTPLIGHTSCVWSLAFSCEGSILASGSADCTVKLWDINTSTKVSRTEEKSGNATRLRSLKTLPTKSTPVYALRFSRRNLLFAAGALAKSG* | 666 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Dod09g1861 | 665 | PANTHER | CANNONBALL-RELATED | 1 | 664 | - | - | |
| Dod09g1861 | 665 | ProSitePatterns | Trp-Asp (WD) repeats signature. | 360 | 374 | IPR019775 | - | |
| Dod09g1861 | 665 | SUPERFAMILY | Taf5 N-terminal domain-like | 45 | 188 | IPR037264 | - | |
| Dod09g1861 | 665 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 579 | 620 | IPR001680 | GO:0005515 | |
| Dod09g1861 | 665 | ProSitePatterns | Trp-Asp (WD) repeats signature. | 598 | 612 | IPR019775 | - | |
| Dod09g1861 | 665 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 411 | 443 | - | - | |
| Dod09g1861 | 665 | Gene3D | - | 571 | 664 | IPR015943 | GO:0005515 | |
| Dod09g1861 | 665 | MobiDBLite | consensus disorder prediction | 237 | 299 | - | - | |
| Dod09g1861 | 665 | PRINTS | G protein beta WD-40 repeat signature | 598 | 612 | IPR020472 | - | |
| Dod09g1861 | 665 | PRINTS | G protein beta WD-40 repeat signature | 430 | 444 | IPR020472 | - | |
| Dod09g1861 | 665 | PRINTS | G protein beta WD-40 repeat signature | 514 | 528 | IPR020472 | - | |
| Dod09g1861 | 665 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 453 | 487 | - | - | |
| Dod09g1861 | 665 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 495 | 532 | - | - | |
| Dod09g1861 | 665 | ProSitePatterns | Trp-Asp (WD) repeats signature. | 556 | 570 | IPR019775 | - | |
| Dod09g1861 | 665 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 453 | 494 | IPR001680 | GO:0005515 | |
| Dod09g1861 | 665 | SMART | WD40_4 | 530 | 569 | IPR001680 | GO:0005515 | |
| Dod09g1861 | 665 | SMART | WD40_4 | 488 | 527 | IPR001680 | GO:0005515 | |
| Dod09g1861 | 665 | SMART | WD40_4 | 572 | 611 | IPR001680 | GO:0005515 | |
| Dod09g1861 | 665 | SMART | WD40_4 | 334 | 373 | IPR001680 | GO:0005515 | |
| Dod09g1861 | 665 | SMART | WD40_4 | 446 | 485 | IPR001680 | GO:0005515 | |
| Dod09g1861 | 665 | SMART | WD40_4 | 404 | 443 | IPR001680 | GO:0005515 | |
| Dod09g1861 | 665 | Gene3D | TFIID subunit TAF5, NTD2 domain | 39 | 188 | IPR037264 | - | |
| Dod09g1861 | 665 | SUPERFAMILY | WD40 repeat-like | 335 | 660 | IPR036322 | GO:0005515 | |
| Dod09g1861 | 665 | Pfam | WD40 associated region in TFIID subunit, NTD2 domain | 55 | 183 | IPR007582 | - | |
| Dod09g1861 | 665 | ProSitePatterns | Trp-Asp (WD) repeats signature. | 514 | 528 | IPR019775 | - | |
| Dod09g1861 | 665 | Pfam | WD domain, G-beta repeat | 490 | 527 | IPR001680 | GO:0005515 | |
| Dod09g1861 | 665 | Pfam | WD domain, G-beta repeat | 531 | 569 | IPR001680 | GO:0005515 | |
| Dod09g1861 | 665 | Pfam | WD domain, G-beta repeat | 450 | 485 | IPR001680 | GO:0005515 | |
| Dod09g1861 | 665 | Pfam | WD domain, G-beta repeat | 343 | 373 | IPR001680 | GO:0005515 | |
| Dod09g1861 | 665 | Pfam | WD domain, G-beta repeat | 409 | 443 | IPR001680 | GO:0005515 | |
| Dod09g1861 | 665 | Pfam | WD domain, G-beta repeat | 573 | 611 | IPR001680 | GO:0005515 | |
| Dod09g1861 | 665 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 411 | 443 | IPR001680 | GO:0005515 | |
| Dod09g1861 | 665 | Gene3D | - | 249 | 489 | IPR015943 | GO:0005515 | |
| Dod09g1861 | 665 | CDD | TAF5_NTD2 | 57 | 189 | IPR007582 | - | |
| Dod09g1861 | 665 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 579 | 614 | - | - | |
| Dod09g1861 | 665 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 537 | 574 | - | - | |
| Dod09g1861 | 665 | MobiDBLite | consensus disorder prediction | 237 | 284 | - | - | |
| Dod09g1861 | 665 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 495 | 536 | IPR001680 | GO:0005515 | |
| Dod09g1861 | 665 | CDD | WD40 | 411 | 660 | - | - | |
| Dod09g1861 | 665 | Gene3D | - | 490 | 570 | IPR015943 | GO:0005515 | |
| Dod09g1861 | 665 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 537 | 578 | IPR001680 | GO:0005515 | |
| Dod09g1861 | 665 | PANTHER | TRANSCRIPTION INITIATION FACTOR TFIID | 1 | 664 | IPR037783 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Dod09g1861 | Dod-Chr9 | 40218188 | 40225628 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Dod09g1861 | 352 | 633 | Miscellaneous Gene Families | AT5G08390 | 24.483 | 2.33e-19 | 90.9 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Dod09g1861 | K03130 | - | gmx:100805953 | 1215.68 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Dod09g1861 | 09 | 40218188 | 40225628 | Dod09g1861 | 09 | 40218188 | 40225628 | ECH | |
| Dod08g1748 | 08 | 41475810 | 41502628 | Dod09g1861 | 09 | 40218188 | 40225628 | PCT |