Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g01906 ATGGGATTCTTCAGCGGCATGATCCTCGGTATCGCCATTGGTATCGTATTGATCGTCGCTTTCGCTCGTCACGAGAGCGTTCGATCCACACGTCGCTCCGATTTGGCGAAGACGATAGCCGCGTTTGCGAGAATGACAGTGGAAGATTCCAGAAAGCTTTTGCCTCCTAAGTTCTATCCATCATGGGTGGTCTTCACTCGGAGACAGAAGTTAAATTGGCTTAATATCCAACTCAAGAGGATTTGGCCACATGTTGACGAGGCAGTGTCAGAGTTGATAAAAACCAATGTGGAACCAATTCTTGAACAATATAGGCCGGCTGTTTTGTCTTCTCTCACCTTCTCCAAGTTGACCCTTGGTACCGTGGCTCCACAATTTACAGGAGTTACAATTGTTGAAGAGGATAGTGGGCCTGATGGGGTGACTATGGATCTTGAGATGCAATGGGATGGAAACCCGAATATCGTTCTGGACATTAAAACCCGAGTTGGTGTCGTACTTCCTGTACAGGTAAAAAATATTGGATTCACTGGGGTTTTCAGGTTGATCTTCAAACCACTAGTGGATGCGTTCCCTGGTTTCGGAGCTGTTTGTTTTTCCTTGAAAGAAAAGAAAGATCTGGATTTTACTCTGAAGGTTATTGGTGGTGATTTATCGGCTTTACCCGGGATATCTGAAGCTATAGAGGAAACAATTAGAGATGCGATTGAAGACTCTGTAACTTGGCCTGTACGCCACATTATACCAATTTTACCGGGGGATTACAGTAATCTTGAGTTGAAACCGATTGGAATACTAGAAGTAAAACTAGTGCAAGCAAAGAGCTTAACAAATAAAGATGTGATTGGGAAATCCGATCCTTATGCTCTCCTTTTTGTACGCCCGCTTCGTGACCGAACCAAAACCAGTAAAGTTATGAACAACCAGTTGAATCCAGTATGGAATGAGCACTTTGAATTCACTATCGAAGATGCGGCAACGCAGCATTTGACCGTAAGAATTTTCGATGATGAAGGTATTCAGGCTTCTGAACTTATTGGCTGTGCCCAAGTTTCACTGAAGGACCTTGAACCTGGTAAAGTCAAGGATGTATGGCTTAAGCTGGTTAAGGATTTGGAGGTCCATAGAGATAACAAATACAGGGGTGAGGTGCACTTGGAGCTCTTGTACTGCCCATTTGGAGTCGAAAGCGCCATTAAGAACCCTTTTGACCCTGATTTCTCATTGACCTCATTCGAGAAGACCCTCAAGAGTGGTGAGGCAGAGGGTGAGGATGCGACAGGACCACGTAGGAGAAGCAACGTGATTGTAAGAGGGGTTCTATCTGTGACGGTGATTTCAGCTGAAGACCTACCAGTAGTGGACTTAATGGGCAAGGCTGATCCATTTGTCGTCCTTAGTTTGAAAAAAACAGAAAAAAAACTCAAGACCAGAGTTGTAAATGAATCCCTAAACCCAGTTTGGAATCAAACATTTGATTTTGTTGTGGAAGATGGCTTACACGAAATGTTAATTCTGGAAGTCTACGATCATGATACGTTTGGCAAGGTGATACTTCAGGAATTTGTTTTCTTTCGAAGTGCTGCTTGA 1590 0.4377 MGFFSGMILGIAIGIVLIVAFARHESVRSTRRSDLAKTIAAFARMTVEDSRKLLPPKFYPSWVVFTRRQKLNWLNIQLKRIWPHVDEAVSELIKTNVEPILEQYRPAVLSSLTFSKLTLGTVAPQFTGVTIVEEDSGPDGVTMDLEMQWDGNPNIVLDIKTRVGVVLPVQVKNIGFTGVFRLIFKPLVDAFPGFGAVCFSLKEKKDLDFTLKVIGGDLSALPGISEAIEETIRDAIEDSVTWPVRHIIPILPGDYSNLELKPIGILEVKLVQAKSLTNKDVIGKSDPYALLFVRPLRDRTKTSKVMNNQLNPVWNEHFEFTIEDAATQHLTVRIFDDEGIQASELIGCAQVSLKDLEPGKVKDVWLKLVKDLEVHRDNKYRGEVHLELLYCPFGVESAIKNPFDPDFSLTSFEKTLKSGEAEGEDATGPRRRSNVIVRGVLSVTVISAEDLPVVDLMGKADPFVVLSLKKTEKKLKTRVVNESLNPVWNQTFDFVVEDGLHEMLILEVYDHDTFGKVILQEFVFFRSAA* 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g01906 529 CDD SMP_SYT 60 250 - -
Lapu9g01906 529 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 67 251 IPR031468 GO:0008289
Lapu9g01906 529 CDD C2 266 368 - -
Lapu9g01906 529 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 376 516 IPR035892 -
Lapu9g01906 529 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 1 519 IPR045050 GO:0008289
Lapu9g01906 529 CDD C2 441 516 - -
Lapu9g01906 529 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 70 250 IPR039010 -
Lapu9g01906 529 PRINTS C2 domain signature 504 512 IPR000008 -
Lapu9g01906 529 PRINTS C2 domain signature 482 495 IPR000008 -
Lapu9g01906 529 PRINTS C2 domain signature 456 468 IPR000008 -
Lapu9g01906 529 Gene3D C2 domain 437 522 IPR035892 -
Lapu9g01906 529 ProSiteProfiles C2 domain profile. 421 529 IPR000008 -
Lapu9g01906 529 ProSiteProfiles C2 domain profile. 243 366 IPR000008 -
Lapu9g01906 529 Pfam C2 domain 439 516 IPR000008 -
Lapu9g01906 529 Pfam C2 domain 264 368 IPR000008 -
Lapu9g01906 529 SMART C2_3c 440 529 IPR000008 -
Lapu9g01906 529 SMART C2_3c 265 365 IPR000008 -
Lapu9g01906 529 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 262 393 IPR035892 -
Lapu9g01906 529 Gene3D C2 domain 256 392 IPR035892 -
Lapu9g01906 529 FunFam Plant synaptotagmin 259 401 - -
Lapu9g01906 529 FunFam Extended synaptotagmin-2 422 524 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g01906 Lapu-Chr9 33863205 33871293 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g01906 266 510 Lipid Metabolism Gene Families AT1G51570 29.183 1.25e-11 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g01906 - - gmx:100787972 916.761
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu9g01906 9 33863205 33871293 Lapu9g01906 9 33863205 33871293 ECH