Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01590 ATGGGATTCATGAGCGGCATGTTCATCGGTATCGCCATTGGTATTGGTTTGATCGTTGCTTTCGCTCGTCACGAAAGCGTCCGATCCAAGCGTCGCAAAGATTTGGCGAAGACGATAGCAGAGTTTGCGAGAATGACGGTGGAAGATTCCAGAAAACTTCTGCCTCCTAATTTCTATCCGTCTTGGGTGTTAAATTGGTTTAATAGCTTACTCAATAAGATTTGGCCGTACGTTAATGAGGCAGCGTCGGAGTTGATAAAAAGCAATGTGGAACCCATTCTTGAAGAATATAAACCCGTTATTTTGTCTTCTCTCACCTTCTCCAAGTTGACCCTTGGCACTGTGGCTCCACAATTTACAGGAGTTACAATTGTTGAAGAGGACAGTGGAGCTGGTGGGGTGACCATGGATCTGGAGATGCAGTGGGATGGTAACCCGAATATCGTCCTTGACATTAAAACAAAAGTTGGTGTTAAACTTCCTGTACAGGTAAAAAATATTGGATTCACTGGGGTTTTCAGGTTGATCTTCAAACCACTAGTGAATGAGTTCCCTGCTTTTGGAGCTATTTGTTTTTCCTTGAAAGAAAAGAAAGATCTGGATTTTACTCTTAAGGTTGTTGGTGGCGATCTATCATCTTTACCGGGGGTATCTGATGCTATAGAGGAAACAATTAGAGACGCCATTGAAGACTCTATAACTTGGCCAGTACGCCAAATTATACCAATTTTACCGGGAGATTACAGTAATCTAGAGTTGAAACCGGTTGGAATACTAGAAGTAAAACTAGTGCAAGCAAAGAACTTATCAAATAAAGATGTGATTGGGAAATCCGATCCTTATGCTGTTGTATTTGTACGCCCGCTTCGTGACAGAACCAAAACCAGTAAAATAATCAACAACCAGTTGAATCCAATATGGAATGAGAACTTTGAGTTCATTATTGAAGATGCGTCAACGCAACACTTGACCGTAAGAATTTTCGATGATGAAGGCATTCAGGCTTCTGAGCTTATTGGCTGTGCCCAAGTTTCGCTGAAGGATCTTGAACCTGGTAAAGTCAAGGATGTATGGCTTCACTTGGTTAAGGATTTGGCGGTCCATAGAGATAACAAGTACAGGGGTGAGGTGCACTTGGAGCTCTTGTACTGCCCATTTGGAGTCGAAAACAGCATTAAGAACCCTTTTGACCCTGATTTCTCATTAACCTCGTTCGAGAAGACCCTCAAGAGTGGACCTGGTGACGCAGAGGCTGAGGATACAAGGACACGTAGGAGAAGCAACGTGATTATAAGAGGGGTTCTGTCCGTGACAGTGATTTCAGCTGAAGACTTGCCAGTAGTGGACTTAATGGGAAAGGCTGATCCATTTGTTGTCCTTATGTTGAAAAAAACTGATAAAAAGCTCAAGACCAGAGTTGTAAATGAATCCCTAAACCCAGTTTGGAATCAAACATTTGATTTTGTTGTGGAGGATGGCTTACACGAAATGTTAATTCTTGAAGTCTACGATCACGACACGTTTGGCAAGGAAAAAATTGGAAGAGTGATCTTGACTCTGACTAAGGTCATCTTAGAAGGGGAATACAGTGAAACCTTTCCCCTAGATGGAGCTAAATCTGGAAACATTTCTTTGCATTTGAAGTGGGCTGCACAGCACAAGTTCCGGGATCCTTAG 1677 0.4246 MGFMSGMFIGIAIGIGLIVAFARHESVRSKRRKDLAKTIAEFARMTVEDSRKLLPPNFYPSWVLNWFNSLLNKIWPYVNEAASELIKSNVEPILEEYKPVILSSLTFSKLTLGTVAPQFTGVTIVEEDSGAGGVTMDLEMQWDGNPNIVLDIKTKVGVKLPVQVKNIGFTGVFRLIFKPLVNEFPAFGAICFSLKEKKDLDFTLKVVGGDLSSLPGVSDAIEETIRDAIEDSITWPVRQIIPILPGDYSNLELKPVGILEVKLVQAKNLSNKDVIGKSDPYAVVFVRPLRDRTKTSKIINNQLNPIWNENFEFIIEDASTQHLTVRIFDDEGIQASELIGCAQVSLKDLEPGKVKDVWLHLVKDLAVHRDNKYRGEVHLELLYCPFGVENSIKNPFDPDFSLTSFEKTLKSGPGDAEAEDTRTRRRSNVIIRGVLSVTVISAEDLPVVDLMGKADPFVVLMLKKTDKKLKTRVVNESLNPVWNQTFDFVVEDGLHEMLILEVYDHDTFGKEKIGRVILTLTKVILEGEYSETFPLDGAKSGNISLHLKWAAQHKFRDP 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01590 558 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 60 244 IPR031468 GO:0008289
Cca03g01590 558 SMART C2_3c 434 532 IPR000008 -
Cca03g01590 558 SMART C2_3c 258 358 IPR000008 -
Cca03g01590 558 ProSiteProfiles C2 domain profile. 236 359 IPR000008 -
Cca03g01590 558 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 369 540 IPR035892 -
Cca03g01590 558 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 65 243 IPR039010 -
Cca03g01590 558 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 1 557 IPR045050 GO:0008289
Cca03g01590 558 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 255 386 IPR035892 -
Cca03g01590 558 PRINTS C2 domain signature 450 462 IPR000008 -
Cca03g01590 558 PRINTS C2 domain signature 498 506 IPR000008 -
Cca03g01590 558 PRINTS C2 domain signature 476 489 IPR000008 -
Cca03g01590 558 PANTHER SYNAPTOTAGMIN-4 1 557 - -
Cca03g01590 558 Pfam C2 domain 257 361 IPR000008 -
Cca03g01590 558 Pfam C2 domain 433 535 IPR000008 -
Cca03g01590 558 ProSiteProfiles C2 domain profile. 414 533 IPR000008 -
Cca03g01590 558 CDD C2 435 535 - -
Cca03g01590 558 CDD C2 259 361 - -
Cca03g01590 558 Gene3D C2 domain 253 393 IPR035892 -
Cca03g01590 558 Gene3D C2 domain 417 551 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01590 Cca-Chr3 34697524 34704737 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01590 392 523 Lipid Metabolism Gene Families AT1G51570 31.061 2.07e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01590 - - gmx:100787972 978.393
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01590 03 34697524 34704737 Cca03g01590 03 34697524 34704737 ECH