Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g0940 ATGTCGAGTCATCCAGGCCTGGGCCGATTTCAAGCTGTCCAAGCCCAAGCTGATGTCGAGTCGTCCGGGCCCCGACCGATGTCAAGCCGTCCAAGTCTGGACCGATGTCGAGATGTCTGGGTCCCGACTGATGTTGAGCCATTCGGGCCCGGGCTGTTGTCTAGCCGTTCGGGCCTGGGTCGATGTCAATTCGTCCAGGCCTGGATCGATGTCGAGATGTCCGGGCCCAGGCCGATGTTGAGTCGTCCGGGCCTCGGCCGTTGTCAAGTCGTTCAGGAAACAATTAAAGATGCGATTGAAGACTCTGTAAGTTGGCCTGTACGCCAAGTTATACCCATTTTACCGGGGGATTACAGTAATCTAGAGTTGAAACCGGTTGGAATACTAGAAGTAAAACTAGTTCAAGCAAAGAGCTTAACAAATAAAGATTTGATTGGGAAATCCGATCCTTATGCTGTCCTTTTTGTACGCCCACTTCGTGACAGAACCAAAACCAGTAAAGTAATGAACAACCAGTTGAATCCAGTATGGAATGAACACTTTGAATTCACTATTGAAGATGCGGCATCGCAGCACTTGACCATAAGAGTTTTCGATGATGAAGGCATTCAAGCTTCTGAACTTATTGGCTGTGCCCAAACTTCACTGAAGGACCTCGAACCTGGTAAAGTCAAGGATGTGTGGCTTAAGCTGGTTAAGGATTTGGAGGTCCATAGAGATAACAAATATAGGGGTGAGGTGCACTTGGAGCTCTTGTTCTGCCCATTTGGAGTCGAAAGCGCCATTAAGAACCCTTTTGACCCTGATTTCTCATTAACCTCGTTCGAGAAGACCCTCAAGAGTGGTGAAGCAGAGGGCGAGGATCATACTGTGTCACGTAGGAAAAGCAACGTGATTGTAAGAGGGGTTCTATCCGTGACGGTGATTTCAGCTGAAGACTTACCAGTGGTGGACTTAATGGGCAAGGCTGATCCATTTGTTGTCCTTAGTTTGAAAAAAACAGAAAAAAAACTCAAGACCAGAGTTGTAAATGAATCCCTAAACCCAGTTTGGAATCAAACATTTGATTTTGTTGTGGAGGATGGCTTACATGAAATGTTAATTCTGGAAGTCTACGATCATGATACGTTTGGCAAGGAAAAAATTGGAAGAGTGATCTTAACACTGACTAAGGTCATCTTAGAAGGAGAATACAATGAAACTTATCCTCTGGATGGAGCTAAATCCGGAAACATTTCTTTATATTTGAAGTGGACTCCGCAGCATAAATTCCGGGATACTTAG 1284 0.4564 MSSHPGLGRFQAVQAQADVESSGPRPMSSRPSLDRCRDVWVPTDVEPFGPGLLSSRSGLGRCQFVQAWIDVEMSGPRPMLSRPGLGRCQVVQETIKDAIEDSVSWPVRQVIPILPGDYSNLELKPVGILEVKLVQAKSLTNKDLIGKSDPYAVLFVRPLRDRTKTSKVMNNQLNPVWNEHFEFTIEDAASQHLTIRVFDDEGIQASELIGCAQTSLKDLEPGKVKDVWLKLVKDLEVHRDNKYRGEVHLELLFCPFGVESAIKNPFDPDFSLTSFEKTLKSGEAEGEDHTVSRRKSNVIVRGVLSVTVISAEDLPVVDLMGKADPFVVLSLKKTEKKLKTRVVNESLNPVWNQTFDFVVEDGLHEMLILEVYDHDTFGKEKIGRVILTLTKVILEGEYNETYPLDGAKSGNISLYLKWTPQHKFRDT* 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g0940 427 ProSiteProfiles C2 domain profile. 285 402 IPR000008 -
Pvu9g0940 427 CDD C2 129 231 - -
Pvu9g0940 427 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 88 426 IPR045050 GO:0008289
Pvu9g0940 427 MobiDBLite consensus disorder prediction 1 28 - -
Pvu9g0940 427 Gene3D C2 domain 123 262 IPR035892 -
Pvu9g0940 427 Gene3D C2 domain 299 426 IPR035892 -
Pvu9g0940 427 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 298 421 IPR035892 -
Pvu9g0940 427 SMART C2_3c 303 401 IPR000008 -
Pvu9g0940 427 SMART C2_3c 128 228 IPR000008 -
Pvu9g0940 427 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 125 256 IPR035892 -
Pvu9g0940 427 PANTHER SYNAPTOTAGMIN-4 88 426 - -
Pvu9g0940 427 CDD C2 304 404 - -
Pvu9g0940 427 PRINTS C2 domain signature 319 331 IPR000008 -
Pvu9g0940 427 PRINTS C2 domain signature 345 358 IPR000008 -
Pvu9g0940 427 PRINTS C2 domain signature 367 375 IPR000008 -
Pvu9g0940 427 Pfam C2 domain 302 404 IPR000008 -
Pvu9g0940 427 Pfam C2 domain 127 231 IPR000008 -
Pvu9g0940 427 MobiDBLite consensus disorder prediction 1 34 - -
Pvu9g0940 427 ProSiteProfiles C2 domain profile. 108 229 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g0940 Pvu-Chr9 14180140 14185656 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g0940 128 392 Lipid Metabolism Gene Families AT4G00700 24.632 7.75e-13 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g0940 - - pvu:PHAVU_009G091600g 826.624
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g0940 9 14180140 14185656 Pvu9g0940 9 14180140 14185656 ECH