Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0564 ATGGCGGGAAACGACTGGCTCAACAGCTACCTCGAAGCCATCATCGACGCCGGACCTAACCTCGGCGACGCCAAGTCCTCTCTTCTGCTCCGGGAGCGCGGCCATTTCAGTCCCACTCGCTACTTCGTCGAAGAGGTAATCACTGGCTTCGATGAGACCGATCTCCACCGCTCCTGGGCTCGGGCCTCTGCAACGAGGAGTCCACAGGAAAGGAATACCAGATTGGAAAATATGTGTTGGAGGATTTGGAATTTGGCTCGAAAGAAGAAGCAGCTTGAGGGAGAGGAAGCTCAACGTGTGGCTAAACGTCATATTGATCATGAAAGGGGACGCAGAGAGGCAACTGCTGATATGTCAGAAGACTTATCAGAAGGAGAGAAAGGGGACACAGTTAGTGATCTGCCAGCTCAGGCTGATAATTTTAAAGGACAAATGCGGAGAATCAATTCTATTGATGTTATGGAGAACTGGGCTAGTCAACACAAGGAAAAGAAACTCTATATTGTATTAATAAGTCTTCATGGCTTGATACGTGGTGAAAATATGGAGCTCGGTCGTGATTCTGATACAGGTGGTCAGGTTAAGTATGTTGTAGAACTTGCCAGGGCCTTAGGTACAATGCCAGGAGTTTATCGGGTTGATTTGCTGACAAGACAAGTATCAGCACCAGATGTAGATTGGAGTTATGGTGAACCAGCAGAGATGCTACATCCAGTAAACTCTGAAAATCCAGTACAGGAGATTGGTGAGAGCAGTGGTGCTTATATAATCCGTATACCATTTGGACCAAAGGATAAATATATTTCAAAAGAACTCCTCTGGCCCCATATTCCTGAATTTGTTGATGGTGCACTTGTCCACATTATACAGATGTCCAAGGTTCTTGGAGAGCAAATTGGTAATGGGCAACCAGTCTGGCCTATTGCAATCCATGGACATTATGCAGATGCTGGTGACTCTGCTGCTCTTCTCTCTGGAGCTATAAATGTACCAATGCTTTTTACTGGCCACTCACTAGGACGAGACAAGCTTGAACAACTCCTGAAACAAGGACGACAATCAAATGAAGAAATAAATGCAACTTACAAAATTACTCGGCGGATAGAGGCTGAGGAGCTAACCCTTGATGCCTCTGAGGTTGTAATCACCAGCACGAGACAGGAGATAGAACAGCAATGGAGTCTATATAATGGCTTTGATCCAGTAATAGAGCGAAAACTACGAGCCAGGATCAGACGCAATGTGAGCTGTTTAGGCAGGTTTATGCCTCGTATGGTTATAATTCCTCCTGGAATGGAATTTCATCATATTATTCCACAAGATGGGGATATGGATGGAGAAATTGAAGGAAGTGGAGCTGATCCATCTTCTCCAGATCCACCAATTTGGGCAGAGATAATGAGATTCTTTACCAATCCTCGCAAGCCTATGATACTTGCTCTTGCAAGAGCAGACCCCAAAAAGAACATTACAACTTTGGTCAAAGCTTTTGGAGAGTGCCGCTCACTCAGGGAGCTTGCCAATCTTACATTAATAATGGGCAACCGTGATGACATCGATGAAATGTCTAGCACAAATGCATCTGTTCTTATTTCAATACTTAAGCTGATTGACAAATATGATATGTATGGCCAAGTGGCTTATCCTAAACATCACAAGCAGTCTGAAGTTCCTGAGATTTACCATCTGGCAGCAAAAACAAAGGGTGTTTTCATAAATCCAGCTTTCATTGAGCCATTTGGGCTGACTTTGATAGAGGCTGCAGCTCATGGTTTGCCCATTGTTGCCACAAAAAATGGAGGTCCTGTGGACATTCATCGGGTTCTTGATAATGGTCTACTGGTTGACCCCCATGATCAACAGTCAGTTGCTAATGCTCTTCTAAAGCTTGTTGCAGATAAACACCTTTGGGGAAGATGCAGGCAGAATGGACTAAAAAACATCCACCTTTTCTCATGGCCAGAGCATTGTAAGACATACTTAGCTCGGATAGCCTGCTGCAAACAGAGGCATCCAGAATGGCAAAAACCTGACGATGGATTTGAAAGTTCAGGATCAGACTCACCTGGTGGTTCCTTGAGAGATATACAGGATATATCTTTAAATTTGAAGCTTTCAGTGGGTGATGAAAAAAATGAAGTCAGTCGCACTCTTGACAATTATTTAGATTCTGAAGAAAATGCTGTAGATGGAAAGAGCAAGTTAGAGAATGCTGTTTCTTCATGGTCAAAGGGTGTTTCTGTAGGCACACAAAAGGATGGGTCCATCTACAAATCTGAGCATCATATTGGTAGTAGTAAGTCCCCAGCATTGAGGAAGAGGAAGTATATTTTTGTTATTGCTGTGGATGGCGATGGAACAACTGATTTTCTTGAAAGCATTAAAATGGTTGTTGAGACTGTCAGGAAGGATAAATATGCTGGATCCGTAGGGTTCATATTGTCAACTTCCTTGGCCATATCTGAGATGCACTCTCTTCTGGTATCAGGAGGTCTAAGTCATTCAGATTTTGACGCTTTTATTTGCAACAGTGGTACTGAACTTTATTATCCATCTTCAACTTCTGAAGATGGCACTCCTGGGCTTCCATTTCTATTAGACTCAGATTATCATTCACACATTGAATACCGTTGGGGTGGAGAAGATTTGAGGAAAACTTTGTTACGCTGGGCTGCTTCTACCACTGATGAAAAGGGGGAAGGACCAATTGTTTCTGAAGACAAATCAGGATCAACCACACATTGCTATGTATTCAAAGTGGAGAAACCAGAATTGATCCCCTCTATCAAGGAACTTCGAAAGTCAATGAGAATTCAGGCTCTTAGGTGCCATGTTATATATTGTCAAAACGGTAACAAGCTGAATATCATCCCTGTCTTGGCTTCTCGATCTCAAGCCCTCAGGTATCTGCATGTCCGATGGGGCATAGACTTGTCACATGTTGTGGTCTTTGTGGGAGAACATGGGGACACAGATTACGAAGGATTGCTCGGTGGACTCCATAAAACAGTGATACTGAAAGGAGTTGGCTGCAGTGTTGGTAAGCATCATGCTCACAGATATTACCCTCTAGAAGACGTTGTGCCATTTGATAGCCCCAACATCACTCAGACCGAAGGATGCAACAGCAACAGCATAAGGGCATCTCTAGGGAAACTAGGGGTTCTTAAGGTTTAA 3177 0.4366 MAGNDWLNSYLEAIIDAGPNLGDAKSSLLLRERGHFSPTRYFVEEVITGFDETDLHRSWARASATRSPQERNTRLENMCWRIWNLARKKKQLEGEEAQRVAKRHIDHERGRREATADMSEDLSEGEKGDTVSDLPAQADNFKGQMRRINSIDVMENWASQHKEKKLYIVLISLHGLIRGENMELGRDSDTGGQVKYVVELARALGTMPGVYRVDLLTRQVSAPDVDWSYGEPAEMLHPVNSENPVQEIGESSGAYIIRIPFGPKDKYISKELLWPHIPEFVDGALVHIIQMSKVLGEQIGNGQPVWPIAIHGHYADAGDSAALLSGAINVPMLFTGHSLGRDKLEQLLKQGRQSNEEINATYKITRRIEAEELTLDASEVVITSTRQEIEQQWSLYNGFDPVIERKLRARIRRNVSCLGRFMPRMVIIPPGMEFHHIIPQDGDMDGEIEGSGADPSSPDPPIWAEIMRFFTNPRKPMILALARADPKKNITTLVKAFGECRSLRELANLTLIMGNRDDIDEMSSTNASVLISILKLIDKYDMYGQVAYPKHHKQSEVPEIYHLAAKTKGVFINPAFIEPFGLTLIEAAAHGLPIVATKNGGPVDIHRVLDNGLLVDPHDQQSVANALLKLVADKHLWGRCRQNGLKNIHLFSWPEHCKTYLARIACCKQRHPEWQKPDDGFESSGSDSPGGSLRDIQDISLNLKLSVGDEKNEVSRTLDNYLDSEENAVDGKSKLENAVSSWSKGVSVGTQKDGSIYKSEHHIGSSKSPALRKRKYIFVIAVDGDGTTDFLESIKMVVETVRKDKYAGSVGFILSTSLAISEMHSLLVSGGLSHSDFDAFICNSGTELYYPSSTSEDGTPGLPFLLDSDYHSHIEYRWGGEDLRKTLLRWAASTTDEKGEGPIVSEDKSGSTTHCYVFKVEKPELIPSIKELRKSMRIQALRCHVIYCQNGNKLNIIPVLASRSQALRYLHVRWGIDLSHVVVFVGEHGDTDYEGLLGGLHKTVILKGVGCSVGKHHAHRYYPLEDVVPFDSPNITQTEGCNSNSIRASLGKLGVLKV* 1059
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0564 1058 Gene3D Glycogen Phosphorylase B; 168 664 - -
Vvi4g0564 1058 MobiDBLite consensus disorder prediction 100 128 - -
Vvi4g0564 1058 Pfam Sucrose synthase 168 433 IPR000368 GO:0005985|GO:0016157
Vvi4g0564 1058 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 182 662 - -
Vvi4g0564 1058 Gene3D - 878 959 - -
Vvi4g0564 1058 Pfam Sucrose-6F-phosphate phosphohydrolase 799 991 IPR006380 -
Vvi4g0564 1058 CDD GT4_sucrose_synthase 167 662 - -
Vvi4g0564 1058 MobiDBLite consensus disorder prediction 100 135 - -
Vvi4g0564 1058 Coils Coil 341 361 - -
Vvi4g0564 1058 FunFam Sucrose-phosphate synthase 1 432 652 - -
Vvi4g0564 1058 Gene3D Glycogen Phosphorylase B; 432 652 - -
Vvi4g0564 1058 PANTHER SUCROSE-PHOSPHATE SYNTHASE 3-RELATED 1 1053 - -
Vvi4g0564 1058 CDD HAD_SPS 777 1009 IPR035659 -
Vvi4g0564 1058 Pfam Glycosyl transferases group 1 471 644 IPR001296 GO:0016757
Vvi4g0564 1058 Gene3D - 806 987 IPR023214 -
Vvi4g0564 1058 NCBIfam sucrose-phosphate synthase 1 1053 IPR012819 GO:0005985|GO:0046524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0564 Vvi-Chr4 5217811 5232786 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0564 1 1038 Glycosyltransferase AT5G20280 71.689 0.0 1518
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0564 K00696 - vvi:100244135 2128.6