Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g2678 ATGGAGGAAGATGAAATTGCAGGGTACGTGACAGCGTACCTGAAGAAGAAAGGGTTCACGCAAACGGAGAAGATCTTCCAGGAAGAATTCCAAACCAACAAGACCAATTCTTCCCCTCTCGAACCAGACATTGCCAAGCACATTCTCTCTTTCTCTCAGTTGGAGAGTGGCCCTGCAAGATTTCACGATGGTTATAGCAGACTAAGATCATGGACTCACTGTTCCCTAGATTTGTACAAGCATGAGTTGCTTCGTGTGCTTTATCCAGTGTTTATCCATTGCTTTATGGATCTTGTTGCAAAAGGGCATGTTCAGGAAGCTCGGCACTTCTTCAATACCTTCCGTGAAGATCATGAAATGATGCACTTAAGGGACCTGCAAAAGTTGGAAGGTGTTCTTTCCCCCACTCATCTGGAGGAAATGGAATTTGCCCATTCGCTTAGGCAGAGTAAATTCAACATAAAAATATGTGAGTATTCCTATGAGCTTCTATTGCAACATCTACACAGTACACAATCCACTACTATACTTGGTATTATCAATGAGCATATTAACTTCCAAGTTACTCCTGGACAACCTAGCTCAATTGTTGATGATCCTGAGGCTGTCACCCTTAGTGGAAGCAGCCAAGATGCAGCAAACCAGATAAATCAGAAAGAAATACATTGGGGGTTGCTTGAAGACTCTCTGGAAGAGCGACTGGAAAAGGCTAGCTCCTTGCTTTCGGATTCTGAGAAGGGTGAAGGGGAAGCAAAAGAGGGGGAGACAGAGGAGAATAAGAAACGACCAGTTGAAGGAGGAAAGCAAGGTGCCTCGATCAAAAAGGTAAAGAAGGACAAGGGCGGAAGTGCAACAGGGAAAAACACCAAAGCTGAAGTTAATACTGTATCTGCAGCTCCACGAGTTAAACCAGAACTTCCCATGCCCATAATCCCGAGTGAGGTGGAACAGTCAATCCTTGAAGATTTGAGGAACCGTGTACAACTTAGCAGTGTAGCACTGCCATCAGTTAGCTTTTATACTTTTCTAAATACGCATAATGGTTTAAGCTGTTCATCAATATCCCATGATGGATCATTGGTTGCTGGAGGATTTTCTGATTCATCACTGAAGGTTTGGGATATGGCAAAGCTTGGAGAACAGACTGCCAGTTCTCTTTCACAGGATGAGAATGATACATCACAAAATCCACAAATGGGGCAAAGTGGTGGCGGGAAAAGGCAGTATACATTGTTTCAAGGTCATTCAGGGCCAGTTTATGCAGCCTCTTTTAGTCCAGTTGGAGAGTTTATTCTTTCTTCCTCAGCAGACTCAACTAGTATGTACATGATTTCATGTTCTTCCTCAATTTGTTTCTTCACTTCAGTTCGATTATGGAGCACGACTTACAATGCAAATCTTGTTTGTTACAAAGGTCACAATTACCCTGTCTGGGATGTTCAGTTTAGTCCTGTAGGGCATTATTTTGCCAGCTCTTCGCATGACAGAACTGCTAGGATTTGGTCGATGGAAAGGGTACAGCCGTTAAGAATAATGGCAGGGCACTTGTCTGATGTTGATTGTGTGCAATGGCATGCCAACTGCAACTACATTGCAACTGGTTCAAGTGACAAAACAGTTCGACTATGGGATGTTCAGAGTGGGGAGTGTGTCCGAGTTTTTGTTGGTCACAGGAGTATGATCTTGTCATTGGCAATGTCTCCTGATGGACGGTATATGGCATCTGGCGATGAAGATGGCACGATCATGATGTGGGACCTCTCTAGTGGCCGCTGTCTCACACCCTTGATTGGTCACACATCATGTGTCTGGTCACTTGCTTTCAGTTGTGAAGGTTCTGTTCTGGCATCTGGATCTGCTGATTGCAGTGTAAAATTATGGGATGTAAATACGAGCACTAAGGTTTCCAGGGCTGAAGAAAAAAGTGGGAATGCTAGCAGACTTAGATCACTGAAAACATTGCCCACCAAATCTACTCCAGTTTATGCTTTGCGGTTTTCTCGAAGGAATCTTCTATTTGCAGCTGGAGCTCTTGCAAAAAATGGCTAA 2049 0.4383 MEEDEIAGYVTAYLKKKGFTQTEKIFQEEFQTNKTNSSPLEPDIAKHILSFSQLESGPARFHDGYSRLRSWTHCSLDLYKHELLRVLYPVFIHCFMDLVAKGHVQEARHFFNTFREDHEMMHLRDLQKLEGVLSPTHLEEMEFAHSLRQSKFNIKICEYSYELLLQHLHSTQSTTILGIINEHINFQVTPGQPSSIVDDPEAVTLSGSSQDAANQINQKEIHWGLLEDSLEERLEKASSLLSDSEKGEGEAKEGETEENKKRPVEGGKQGASIKKVKKDKGGSATGKNTKAEVNTVSAAPRVKPELPMPIIPSEVEQSILEDLRNRVQLSSVALPSVSFYTFLNTHNGLSCSSISHDGSLVAGGFSDSSLKVWDMAKLGEQTASSLSQDENDTSQNPQMGQSGGGKRQYTLFQGHSGPVYAASFSPVGEFILSSSADSTSMYMISCSSSICFFTSVRLWSTTYNANLVCYKGHNYPVWDVQFSPVGHYFASSSHDRTARIWSMERVQPLRIMAGHLSDVDCVQWHANCNYIATGSSDKTVRLWDVQSGECVRVFVGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLSSGRCLTPLIGHTSCVWSLAFSCEGSVLASGSADCSVKLWDVNTSTKVSRAEEKSGNASRLRSLKTLPTKSTPVYALRFSRRNLLFAAGALAKNG* 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g2678 682 CDD WD40 412 677 - -
Amo20g2678 682 CDD TAF5_NTD2 58 190 IPR007582 -
Amo20g2678 682 MobiDBLite consensus disorder prediction 383 407 - -
Amo20g2678 682 ProSiteProfiles Trp-Asp (WD) repeats profile. 470 511 IPR001680 GO:0005515
Amo20g2678 682 Gene3D - 442 557 IPR015943 GO:0005515
Amo20g2678 682 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID 1 679 IPR037783 -
Amo20g2678 682 ProSiteProfiles Trp-Asp (WD) repeats profile. 512 553 IPR001680 GO:0005515
Amo20g2678 682 MobiDBLite consensus disorder prediction 236 285 - -
Amo20g2678 682 MobiDBLite consensus disorder prediction 191 210 - -
Amo20g2678 682 SUPERFAMILY Taf5 N-terminal domain-like 47 189 IPR037264 -
Amo20g2678 682 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 554 591 - -
Amo20g2678 682 PANTHER CANNONBALL-RELATED 1 679 - -
Amo20g2678 682 ProSitePatterns Trp-Asp (WD) repeats signature. 531 545 IPR019775 -
Amo20g2678 682 PRINTS G protein beta WD-40 repeat signature 531 545 IPR020472 -
Amo20g2678 682 PRINTS G protein beta WD-40 repeat signature 573 587 IPR020472 -
Amo20g2678 682 PRINTS G protein beta WD-40 repeat signature 615 629 IPR020472 -
Amo20g2678 682 SMART WD40_4 463 502 IPR001680 GO:0005515
Amo20g2678 682 SMART WD40_4 405 445 IPR001680 GO:0005515
Amo20g2678 682 SMART WD40_4 505 544 IPR001680 GO:0005515
Amo20g2678 682 SMART WD40_4 335 374 IPR001680 GO:0005515
Amo20g2678 682 SMART WD40_4 589 628 IPR001680 GO:0005515
Amo20g2678 682 SMART WD40_4 547 586 IPR001680 GO:0005515
Amo20g2678 682 ProSitePatterns Trp-Asp (WD) repeats signature. 573 587 IPR019775 -
Amo20g2678 682 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 470 504 - -
Amo20g2678 682 ProSiteProfiles Trp-Asp (WD) repeats profile. 554 595 IPR001680 GO:0005515
Amo20g2678 682 SUPERFAMILY WD40 repeat-like 335 677 IPR036322 GO:0005515
Amo20g2678 682 ProSiteProfiles Trp-Asp (WD) repeats profile. 412 439 IPR001680 GO:0005515
Amo20g2678 682 Pfam WD domain, G-beta repeat 467 502 IPR001680 GO:0005515
Amo20g2678 682 Pfam WD domain, G-beta repeat 507 544 IPR001680 GO:0005515
Amo20g2678 682 Pfam WD domain, G-beta repeat 343 374 IPR001680 GO:0005515
Amo20g2678 682 Pfam WD domain, G-beta repeat 409 439 IPR001680 GO:0005515
Amo20g2678 682 Pfam WD domain, G-beta repeat 548 586 IPR001680 GO:0005515
Amo20g2678 682 Pfam WD domain, G-beta repeat 590 628 IPR001680 GO:0005515
Amo20g2678 682 ProSitePatterns Trp-Asp (WD) repeats signature. 615 629 IPR019775 -
Amo20g2678 682 Gene3D TFIID subunit TAF5, NTD2 domain 41 189 IPR037264 -
Amo20g2678 682 ProSiteProfiles LIS1 homology (LisH) motif profile. 2 34 IPR006594 GO:0005515
Amo20g2678 682 MobiDBLite consensus disorder prediction 236 298 - -
Amo20g2678 682 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 596 631 - -
Amo20g2678 682 ProSiteProfiles Trp-Asp (WD) repeats profile. 596 637 IPR001680 GO:0005515
Amo20g2678 682 Gene3D - 283 441 IPR015943 GO:0005515
Amo20g2678 682 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 512 549 - -
Amo20g2678 682 Gene3D - 558 682 IPR015943 GO:0005515
Amo20g2678 682 Pfam WD40 associated region in TFIID subunit, NTD2 domain 56 184 IPR007582 -
Amo20g2678 682 ProSitePatterns Trp-Asp (WD) repeats signature. 361 375 IPR019775 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g2678 Amo-Chr20 124225765 124232465 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g2678 554 681 Miscellaneous Gene Families AT5G08390 23.256 6.29e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g2678 K03130 - gmx:100781563 1179.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g2678 20 124225765 124232465 Amo20g2678 20 124225765 124232465 ECH