Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g03109 ATGGGATTCATCGGCGGGATGATCATCGGCATCGCCTTCGGCGTTGGATTGATCGTTGCTTTTGCTCGCTACGAAAGCATTCGATCCAAGCGTCGTTCTGATTTGGCGAAGACGGTGGCGATGTTTGCGAGGATGACGGTGGAAGATTCTAGAGTACTTCTGCCTGGAAAGTTCTACCCTTCATGGGTTGTATTCACTAAGAGACAGAAGTTGAGTTTCAAGTTTCAACTCTCTTCGGAGTTGATAAAGAGTAGTGTGGAGCCAATTCTAGAGCAATATAAGCCAGTTATTTTGGCTTCTCTTACCTTCTCCAAGTTGACCCTTGGCACAGTGGCTCCACAATTTACCGGAATTGCCATACTTGAAGAGGAAAGTGGGCCTAATGAATTTACCATAGAGTTAGAGATGCAGTGGGATGGTGACCCCAACATTGTTCTTGATATCAAAACCAAAGTTGGCGTCGTACTTCCCATCCAGGTAAAAAATATTGGATTCACTGGGGTCTTTTGGTTGATATTCAAACCACTAGTGGATGAGTTCCCTACTTTTTCAGCTGTTTCTGTTTCATTGAGAGAAAAGAAAGATCTGGATTTTACTCTAAAAGTAGTCGGCGGTGATATATCAGCTTTACCGGGGGTATCTGATGCTATAGAGGAAACAATTCGGGATGCTATTGAAGACTCTATAACTTGGCCAATGCGCAAAGTCATACCAATTTTACCTGGGGATTACAGTAATCTGGAGTTGAAACCGGTTGGAATATTAGATGTGAAACTGGTGCAAGCAAAGGACTTAACAAATAAGGATATCATTGGTAAATCCGACCCTTTTGCTGTTCTGTTTGTAAGGCCACTTCGTGATAGAACCAAAACAAGCAAAGTAATCAACAATGACTTGAATCCAATATGGAATGAGCACTTTGAGTTCATTGTTGAAGATGCGGATACACAGCACTTGACTGTAAGAGTTTTCGATGATGAAGGCATTTCTGCTGCCGAGCTTATTGGTTGTGCCCAAATGCCTCTAAAGGAACTAGAACCTGGTAAAGTCAAGATTGTGTGGTTGAAACTGGTCAAGGATTTGGAGGTCCATAGGGATAACAAATACAGGGGTGAGGTGCACTTGGAGCTGTTGTACATCCCACATGGAACAGATGACAGCTTTAGGAACCCCTTCGACCCTGATTTCGCATTGACCATATTCGAGAAGACCCTCAAGAGTGGAACTGAACCAGAGGCTGAGGATATTACAGCACGAAAGAAGAACGTCATTGTAAGAGGTGTTCTCTCTGTGACGGTTATTTCAGCTGAAGACTTGCCAGTTGTGGACTTAATGGGCAAGGCTGATCCATTTGTTGTCCTGACGTTGAAGAAATCAGAGAAAAAACTCAAGACTAGGGTCGTAAATGAATCCTTAAATCCAGTTTGGAATCAAACATTTGACTTTGTTGTAGAGGACGGCTTACATGAAATGTTAATTGTTGAAGTCTGGGATCACGATACTTTTGGGAAGGACAAAATGGGAAAAGTGATAATGACTCTAACAAAGGTGATCTTAGAAGGGGAATATCAGGAAACGTATACACTAGAGGGAGCTAAATCTGGAAGGCTTACTTTGCATCTGAGATGGACACCACAGCACAAGTACCGGGATCCTTAG 1659 0.4286 MGFIGGMIIGIAFGVGLIVAFARYESIRSKRRSDLAKTVAMFARMTVEDSRVLLPGKFYPSWVVFTKRQKLSFKFQLSSELIKSSVEPILEQYKPVILASLTFSKLTLGTVAPQFTGIAILEEESGPNEFTIELEMQWDGDPNIVLDIKTKVGVVLPIQVKNIGFTGVFWLIFKPLVDEFPTFSAVSVSLREKKDLDFTLKVVGGDISALPGVSDAIEETIRDAIEDSITWPMRKVIPILPGDYSNLELKPVGILDVKLVQAKDLTNKDIIGKSDPFAVLFVRPLRDRTKTSKVINNDLNPIWNEHFEFIVEDADTQHLTVRVFDDEGISAAELIGCAQMPLKELEPGKVKIVWLKLVKDLEVHRDNKYRGEVHLELLYIPHGTDDSFRNPFDPDFALTIFEKTLKSGTEPEAEDITARKKNVIVRGVLSVTVISAEDLPVVDLMGKADPFVVLTLKKSEKKLKTRVVNESLNPVWNQTFDFVVEDGLHEMLIVEVWDHDTFGKDKMGKVIMTLTKVILEGEYQETYTLEGAKSGRLTLHLRWTPQHKYRDP 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g03109 552 ProSiteProfiles C2 domain profile. 410 527 IPR000008 -
Aip08g03109 552 CDD C2 429 525 - -
Aip08g03109 552 Pfam C2 domain 427 528 IPR000008 -
Aip08g03109 552 Pfam C2 domain 253 357 IPR000008 -
Aip08g03109 552 PRINTS C2 domain signature 492 500 IPR000008 -
Aip08g03109 552 PRINTS C2 domain signature 444 456 IPR000008 -
Aip08g03109 552 PRINTS C2 domain signature 470 483 IPR000008 -
Aip08g03109 552 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 1 551 IPR045050 GO:0008289
Aip08g03109 552 ProSiteProfiles C2 domain profile. 232 355 IPR000008 -
Aip08g03109 552 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 62 239 IPR039010 -
Aip08g03109 552 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 56 240 IPR031468 GO:0008289
Aip08g03109 552 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 423 546 IPR035892 -
Aip08g03109 552 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 251 382 IPR035892 -
Aip08g03109 552 SMART C2_3c 428 526 IPR000008 -
Aip08g03109 552 SMART C2_3c 254 354 IPR000008 -
Aip08g03109 552 Gene3D C2 domain 249 387 IPR035892 -
Aip08g03109 552 Gene3D C2 domain 424 550 IPR035892 -
Aip08g03109 552 PANTHER SYNAPTOTAGMIN-4 1 551 - -
Aip08g03109 552 CDD C2 255 357 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g03109 Aip-Chr8 121131769 121138641 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g03109 245 544 Lipid Metabolism Gene Families AT1G51570 23.724 4.88e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g03109 - - gmx:100787972 899.427
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g03109 08 121131769 121138641 Aip08g03109 08 121131769 121138641 ECH