Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev08g2580 ATGGGATTCATCAGCGGCATGATCCTTGGCTTCGCCATTGGAGTCGGATTGATTGTCGCTTTTGCTCGCTACGAGAACATCCGATCCAAGCGTCGTTCTGATTTGTTAAAATGGCTTAACAGCCAACTTGACAAGATTTGGCCATTCGTTAATGAGGCAGCTTCAGAGTTGATTAAGAACAGTGTAGAACCCATTCTTGAACAATACAAGCCAGTTATTTTGTCTTCTCTTACCTTCTCCAAGTTGACCCTCGGCACTGTGGCTCCACAATTTACAGGAATTGCAATTGTTGATGAGGACAGTGGACCTAATGAAGTGACTATGGAGTTAGAGATGCAATGGGATGGTGACCCCAATATAGTTCTTGACATTAAAACCAAAGTCGGTGTTGTACTTCCAGTGCAGGTAAAAGATATTGGATTCACTGGGGTTTTCAGGTTGATCTTCAAACCACTAGTACATGAATTCCCTGGCTTTGGAGCTATTTCTTTTTCCTTGAGAGAAAAGAGAGATCTGGATTTTACTCTAAAGGTTGTTGGCGGTGATATATCTTCTTTACCGGGGATATCTAATGCTATAGAGGAAACAATTCGTGATGCTATTGAAGACTCAATAACTTGGCCAGTACGCAAAGTCATACCAATCATAGCTGGGGATTACAGTAACCTGGAGTTGAAACCGGTGGGTATGCTAGATGTAAAATTAGTGCAAGCAAAGCAATTAATAAACAAAGATTTCATTGGGAAATCCGATCCATATGCCGAGGTATTTGTACGCCCGCTTCGTGACAGAACCAAAACCAGCAAAACAATCAATAACGATTTGAATCCAGTGTGGAATGAACACTTCGAGTTCGTCGTTGAAGATCTGTCTACGCAACACTTGACCATAAGAGTTTTTGATGATGAAGGCATCTCGGCTGCTGAGCTTCTTGGCTGTGCACAAGTGCCTCTAAAGGAACTTGAACCTGGTAAAGTCAAGGTTGTATGGTTGAAATTGGTTGAGGATTTGAATATCCGTAGAGATAACATATACCGGGGTGAGGTGCACTTGGAGCTTTTGTACATCCCATTTGGAGCAGATAACATCTTTATGGACCCTTTTGACCCTGATTTCTCATTAACATCATTCGAGAAGACACTCAAGAATGGGATTATTGAGCCAGATGTTGAGGATCTTTCAAAATCACCATCACGGAAGAAAAACGTGATTGTAAGAGGGGTTCTTTCTGTAACAGTGATCTCAGCGGAAGACTTGCCAGCGGTGGACTTAATGGGCAAGGCAGACCCATTTGTTGTCCTCACGTTGAAAAAATCAGACAAAAAATTCAAGACTAGGGTGGTAAATGAATCCCTAAACCCAGTTTGGAATCAAACATTTGACTTTGTTGTGGAGGATGGATTACACGAAATGTTATTTGTTGAAGTTTTTGATCACGATACGTTTGGAAAGGAAAAAATTGGAAAACTGATCATGACTCTGACTAAGGTCATCTTAGAAGGGGAGTATCAGGAAACATATAATCTGGAAAGTGCTAAATCTGGAACGCTTTCATTGCATCTGAGGTGGACTCCGCAACACAAGTACCGGGATCCTTAA 1599 0.4165 MGFISGMILGFAIGVGLIVAFARYENIRSKRRSDLLKWLNSQLDKIWPFVNEAASELIKNSVEPILEQYKPVILSSLTFSKLTLGTVAPQFTGIAIVDEDSGPNEVTMELEMQWDGDPNIVLDIKTKVGVVLPVQVKDIGFTGVFRLIFKPLVHEFPGFGAISFSLREKRDLDFTLKVVGGDISSLPGISNAIEETIRDAIEDSITWPVRKVIPIIAGDYSNLELKPVGMLDVKLVQAKQLINKDFIGKSDPYAEVFVRPLRDRTKTSKTINNDLNPVWNEHFEFVVEDLSTQHLTIRVFDDEGISAAELLGCAQVPLKELEPGKVKVVWLKLVEDLNIRRDNIYRGEVHLELLYIPFGADNIFMDPFDPDFSLTSFEKTLKNGIIEPDVEDLSKSPSRKKNVIVRGVLSVTVISAEDLPAVDLMGKADPFVVLTLKKSDKKFKTRVVNESLNPVWNQTFDFVVEDGLHEMLFVEVFDHDTFGKEKIGKLIMTLTKVILEGEYQETYNLESAKSGTLSLHLRWTPQHKYRDP* 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev08g2580 532 Gene3D C2 domain 404 530 IPR035892 -
Aev08g2580 532 Gene3D C2 domain 225 365 IPR035892 -
Aev08g2580 532 Pfam C2 domain 230 333 IPR000008 -
Aev08g2580 532 Pfam C2 domain 407 509 IPR000008 -
Aev08g2580 532 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 32 216 IPR031468 GO:0008289
Aev08g2580 532 PANTHER SYNAPTOTAGMIN-4 1 36 - -
Aev08g2580 532 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 227 358 IPR035892 -
Aev08g2580 532 CDD C2 409 509 - -
Aev08g2580 532 SMART C2_3c 408 506 IPR000008 -
Aev08g2580 532 SMART C2_3c 230 330 IPR000008 -
Aev08g2580 532 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 37 215 IPR039010 -
Aev08g2580 532 PANTHER SYNAPTOTAGMIN-4 37 531 - -
Aev08g2580 532 ProSiteProfiles C2 domain profile. 210 331 IPR000008 -
Aev08g2580 532 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 403 526 IPR035892 -
Aev08g2580 532 CDD C2 231 333 - -
Aev08g2580 532 ProSiteProfiles C2 domain profile. 389 507 IPR000008 -
Aev08g2580 532 PRINTS C2 domain signature 450 463 IPR000008 -
Aev08g2580 532 PRINTS C2 domain signature 424 436 IPR000008 -
Aev08g2580 532 PRINTS C2 domain signature 472 480 IPR000008 -
Aev08g2580 532 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 37 531 IPR045050 GO:0008289
Aev08g2580 532 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 1 36 IPR045050 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev08g2580 Aev-Chr8 24424048 24428496 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev08g2580 231 517 Lipid Metabolism Gene Families AT5G06850 25.249 2.88e-12 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev08g2580 - - gmx:100787972 858.981
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev08g2580 08 24424048 24428496 Aev08g2580 08 24424048 24428496 ECH