Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g0694 ATGCAGTTAAATTGGCTTAATACACAACTAGATAAGATTTGGCCGTTCGTTGATGAGGCAGCGTCAGAATTGATAAGAAACAATGTTGAACCCATTCTTGAACAATATAGGCCAGTGATTTTGTCTTCTCTCACATTTTCCAAGTTGACTCTTGGTAATGTAGCTCCACAATTTACAGGGATTTCAATTATTGAAGAGGATAGTGGACCTAATGGAATCACAATGGAGTTTGACATGCAATGGGATGGTACCCCAAATATTGTTCTTGACATTAAAACCAAAGTTGGTGTCGTACTTCCTGTGCAGGTAAAAAATATTGGATTCACTGGGGTTTTCAGGTTGATCTTCAAACCTCTAGTCAATGAATTCCCTGCTTTTGGAGCTGTCTGTTTTTCTCTAAGAGAAAAGAAAGCTTTGGATTTTACTCTTAAAGTGATTGGTGGCGATATTTCATCTTTGCCGGGGATATCTGATGCAATAGAGGAAACAATTAGAGATGCCATTGAAGACTCTATAACTTGGCCAGTGCGCAAAATTATACCAATTATACCAGGAGATTACAGTAACCTAGAATTGAAACCCGTTGGAACACTAGATGTAAAGTTAGTGCAAGCAAAGAACTTAGCAAACAAAGATCTTATTGGGAAATCTGATCCTTATGCTGTCGTATTTGTACGCCCACTTCGCGACAAAACCAAAACCAGTAAAACAATAGGCAACCAGTTGAACCCAATATGGAATGAACACTTTGAATTCATCATTGAAGATGTATCAACACAACACTTAACCATAAGAATCTTCGATGACGAAGGGATCCAAGCAGCAGAGCTTATTGGTTGTGCCCAAGTTTCCCTAAAGGAACTTGAACCTGGTAAAGTCAAGGATGTATGGTTGAAATTAGTTAAGGATTTAGAAATCCAGAGAGATAACAAATACAGGGGTGAGGTGCACTTGGAGCTCTTGTACTGTCCACATGGATTTGAGAACACTTTAAAGAGCCCTTTTTCCGCTGATTATACATTAACCACTTTTGAGAAGACTCTCAAGAGTGGAACTAGTGACGCAGAGGATGATGATATTTCAGTATCATCATCCTCACGACCATCGTCACGACCGTCATCACGACCGTCGTCACGATCATCATCACGAAGGAAAAGCACTGTGATTGTAAGAGGAGTTTTATCCGTCACAGTAGTTTCAGCTGAAGATTTGCCAGTAGTGGATTTCATGGGCAAGGCTGATCCATTTGTTGTCCTTTCACTGAAAAAATCAGAAAAGAAAGTCAAAACTAGAGTTGTAAATGAAACCTTAAATCCAGTATGGAATCAAACATTTGACTTTGTTGTGGAGGATGGTTTACACGACATGTTAATTGTTGAACTTTGGGATCATGATACATTTGGCAAGGAAAAAATGGGGAAAGTGATCCTGACACTAACGAAGGTGATCCTAGAAGGGGAATATGCCGAAACCTTTATTTTGGATGATGCCAAATCTGGAAAGATTAATTTGCATTTAAGGTGGACTGCACAGCACAAATACCGGGAACCTTAA 1554 0.3932 MQLNWLNTQLDKIWPFVDEAASELIRNNVEPILEQYRPVILSSLTFSKLTLGNVAPQFTGISIIEEDSGPNGITMEFDMQWDGTPNIVLDIKTKVGVVLPVQVKNIGFTGVFRLIFKPLVNEFPAFGAVCFSLREKKALDFTLKVIGGDISSLPGISDAIEETIRDAIEDSITWPVRKIIPIIPGDYSNLELKPVGTLDVKLVQAKNLANKDLIGKSDPYAVVFVRPLRDKTKTSKTIGNQLNPIWNEHFEFIIEDVSTQHLTIRIFDDEGIQAAELIGCAQVSLKELEPGKVKDVWLKLVKDLEIQRDNKYRGEVHLELLYCPHGFENTLKSPFSADYTLTTFEKTLKSGTSDAEDDDISVSSSSRPSSRPSSRPSSRSSSRRKSTVIVRGVLSVTVVSAEDLPVVDFMGKADPFVVLSLKKSEKKVKTRVVNETLNPVWNQTFDFVVEDGLHDMLIVELWDHDTFGKEKMGKVILTLTKVILEGEYAETFILDDAKSGKINLHLRWTAQHKYREP* 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g0694 517 ProSiteProfiles C2 domain profile. 177 298 IPR000008 -
Psa5g0694 517 CDD C2 198 300 - -
Psa5g0694 517 Pfam C2 domain 392 489 IPR000008 -
Psa5g0694 517 Pfam C2 domain 196 300 IPR000008 -
Psa5g0694 517 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 194 325 IPR035892 -
Psa5g0694 517 ProSiteProfiles C2 domain profile. 373 492 IPR000008 -
Psa5g0694 517 PRINTS C2 domain signature 409 421 IPR000008 -
Psa5g0694 517 PRINTS C2 domain signature 435 448 IPR000008 -
Psa5g0694 517 PRINTS C2 domain signature 457 465 IPR000008 -
Psa5g0694 517 SMART C2_3c 393 491 IPR000008 -
Psa5g0694 517 SMART C2_3c 197 297 IPR000008 -
Psa5g0694 517 CDD C2 394 490 - -
Psa5g0694 517 MobiDBLite consensus disorder prediction 352 384 - -
Psa5g0694 517 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 4 182 IPR039010 -
Psa5g0694 517 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 4 516 IPR045050 GO:0008289
Psa5g0694 517 MobiDBLite consensus disorder prediction 357 384 - -
Psa5g0694 517 Gene3D C2 domain 377 511 IPR035892 -
Psa5g0694 517 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 391 509 IPR035892 -
Psa5g0694 517 Gene3D C2 domain 192 330 IPR035892 -
Psa5g0694 517 PANTHER SYNAPTOTAGMIN-4 4 516 - -
Psa5g0694 517 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 1 183 IPR031468 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g0694 Psa-Chr5 56480066 56483909 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g0694 198 510 Lipid Metabolism Gene Families AT4G00700 23.423 1.96e-10 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g0694 - - gmx:100787972 833.943
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g0694 5 56480066 56483909 Psa5g0694 5 56480066 56483909 ECH