Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0573 ATGGCTCTCCCCTTCTTCGTTCTCGCTCTCTTCGTCTTGTTCGGTCTCGGCTCCGATCACGGCTCGGCTTCATCGGCTCATGCCGCTAATTCTGAAGAAGTTCAGATTACTTATGGAACTGTTCTTAAGTTGATGCATGAGAGGACCAAGTTTCGGCTACATTCCCATGATGTACCCTATGGCTCTGGCAGTGGCCAGCAATCTGTCACTAGCTTTCCCAATGTTGAGGATTCCAATAGCTATTGGATTGTTAGACCTCAGCCAGGGACATCTGCCAAACAAGGTGACACCATTAAAAGTGGGACAATAATCCGGTTGCAGCACATGAAGACCAGAAAATGGCTGCACAGCCATTTGCATGCATCCCCAATATCAGGCAACTTAGAGGTGAGCTGCTTTGGATCGGAATCTGAATCTGATACTGGGGACTATTGGAGGCTCCTGATTGAGGGGAGTGGGAAAACTTGGAAACAAGATCAAAGGGTTCGGCTTCAACACGTGGACACTAGTGGCTACTTACATAGTCATGACAAGAAATACACACGGATAGCTGGTGGACAGCAAGAGGTATGTGGTGTCCGAGACAAGCGGGCTGATAACGTCTGGCTGGCAGCAGAAGGTGTCTACTTGCCGGTTACTGAAAGCAAGTAA 651 0.4869 MALPFFVLALFVLFGLGSDHGSASSAHAANSEEVQITYGTVLKLMHERTKFRLHSHDVPYGSGSGQQSVTSFPNVEDSNSYWIVRPQPGTSAKQGDTIKSGTIIRLQHMKTRKWLHSHLHASPISGNLEVSCFGSESESDTGDYWRLLIEGSGKTWKQDQRVRLQHVDTSGYLHSHDKKYTRIAGGQQEVCGVRDKRADNVWLAAEGVYLPVTESK* 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0573 216 ProSiteProfiles MIR domain profile. 153 207 IPR016093 -
Vvi4g0573 216 FunFam Stromal cell-derived factor 2-like protein 19 216 - -
Vvi4g0573 216 SUPERFAMILY MIR domain 31 207 IPR036300 -
Vvi4g0573 216 Gene3D - 20 216 - -
Vvi4g0573 216 ProSiteProfiles MIR domain profile. 33 87 IPR016093 -
Vvi4g0573 216 ProSiteProfiles MIR domain profile. 95 150 IPR016093 -
Vvi4g0573 216 PANTHER STROMAL CELL-DERIVED FACTOR 2-LIKE PROTEIN 1 211 - -
Vvi4g0573 216 SMART mir_2 95 150 IPR016093 -
Vvi4g0573 216 SMART mir_2 153 207 IPR016093 -
Vvi4g0573 216 SMART mir_2 33 87 IPR016093 -
Vvi4g0573 216 Pfam MIR domain 75 200 IPR016093 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0573 Vvi-Chr4 5409357 5415994 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0573 - - vvi:100243952 421.394