Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g0538 ATGGGCTTCATCAGTGGCATGATCATCGGCATCGCTTTTGGCATCGCTCTGATCTTCGCTTTTGCTCGTTTCCATAGTTACCGATCCAAGCGTCGTTCCGATTTGGCGATGGTGGTCGCAGCTTTTGCCAGAATGACGATGGAAGATTCTAGAAGAATTATCCCCTCTAAGTTCTATCCACCTTGGTTAAATTGGCTCAATACCCATCTCAAGAAAATCTGGCCCTATGTTAATGAGGCAGCATCAGCGTTGATAAAAAACAATGTGGAACCCATTCTTCAACAATATACACCCAAAGTCTTATCTTCAATCACCTTTTCCAAGTTGACTCTTGGAACTGTGGCTCCTCAATTAACAGGAATTTCCGTTGTTGAAGAAGAAAGTGGAGCTGATAGAGTGACTATGGAGTTAGAGGTGCAGTGGGATGGTAACCCCAGTATTGTGCTTGATATTAAAACTCGTGTTGGTGTTGTACTACCTGTTCAGGTCAAAGATATTGGATTCACTGGGGTTTTCAGGTTGATCTTCGCACCATTAGTAAATGAGTTTCCTTCCTTCGGAGCTATTTGTTATTCCCTGAGGGAAAAGAAACATCTGGACTTTACTCTTAAAGTTGTAGGTGGTGATATTTCAACACTCCCAGGAATATCTGATGCTATAGATGAAACAATTCGAGATGCTATTGAGGATTCTATAACTTGGCCAGTTCGCAAAATCATACCAATTATACCAAGGGATTACAGCTTCCTGGAGTTAAAACCAGTTGGAACGCTGGAAGTAAAACTAGTGCAAGCGAAGAACTTGGCAAATAAAGATCTGATTGGCAAATCTGATCCTTTTGCAGTTTTATTTGTTCGTCCTCTTCGTGAGAGAACCAAAACCAGCAAAACAATCAACAACCAGTTGAATCCAGTATGGAACGAGAATTATGAGTTCACCGTGGAAGATGCGTCAACGCAGCACTTGACAGTAAGAATATTTGATGATGAAGGCATTGAGGCCGATCAGCTTATAGGCTGTGCCCAAGTGCCGCTAAAGGACCTTCAACCTGGTAAAGTTAAGGATGTCTGGTTGAAACTGGTCAAGGATTTGGAGGTCCAAAGAGATAAAAAATACAGGGGTGAGGTGCACTTGGAGCTCTTGTATTGCCCGTTTGGTGTTGAAAGTAGCTTTACAAACCTGTTTAGTCCTAATTACGCATTAACCACTTTCGAGAAGGCCATTAAGAGTGCATCAGATCAGACACTGGGTGGTGATGTTAACAGATCACAGAGAAAATCTGTGATAGTAAGAGGGGTACTATTTGTGACAGTGATATCAGCTGAAGACCTGCCAGATGTGGACTTAATGGGCAAGGCTAACCCTTATGTGGCCCTTAAGTTGAAAAAAGCAGACCAAAAACACAAGACCAGGGTTGCAAATGCAGGTCTAAACCCTGTTTGGAATCAGACATTGTACTTTGTTGTGGAGGATGCATTACATGAAATGTTGATTCTTGAAGTCTGGGATCAAGATCTTATTGGGAAGAACAAAATTGGAAGAGTGACGATGACACTCACAAGGGTGATCCTAGAAGGGGAAGTTCAGGGAAGTTTTCCCTTAGATGGAGCTAAATCTGGAAAACTTAATCTGCATCTTCGATGGACTCCTCAGCATATGTATCGGGATCCTTAA 1674 0.4229 MGFISGMIIGIAFGIALIFAFARFHSYRSKRRSDLAMVVAAFARMTMEDSRRIIPSKFYPPWLNWLNTHLKKIWPYVNEAASALIKNNVEPILQQYTPKVLSSITFSKLTLGTVAPQLTGISVVEEESGADRVTMELEVQWDGNPSIVLDIKTRVGVVLPVQVKDIGFTGVFRLIFAPLVNEFPSFGAICYSLREKKHLDFTLKVVGGDISTLPGISDAIDETIRDAIEDSITWPVRKIIPIIPRDYSFLELKPVGTLEVKLVQAKNLANKDLIGKSDPFAVLFVRPLRERTKTSKTINNQLNPVWNENYEFTVEDASTQHLTVRIFDDEGIEADQLIGCAQVPLKDLQPGKVKDVWLKLVKDLEVQRDKKYRGEVHLELLYCPFGVESSFTNLFSPNYALTTFEKAIKSASDQTLGGDVNRSQRKSVIVRGVLFVTVISAEDLPDVDLMGKANPYVALKLKKADQKHKTRVANAGLNPVWNQTLYFVVEDALHEMLILEVWDQDLIGKNKIGRVTMTLTRVILEGEVQGSFPLDGAKSGKLNLHLRWTPQHMYRDP 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g0538 557 ProSiteProfiles C2 domain profile. 416 532 IPR000008 -
Dere04g0538 557 FunFam Extended synaptotagmin-2 411 552 - -
Dere04g0538 557 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 427 552 IPR035892 -
Dere04g0538 557 CDD C2 258 360 - -
Dere04g0538 557 Gene3D C2 domain 249 384 IPR035892 -
Dere04g0538 557 Gene3D C2 domain 414 551 IPR035892 -
Dere04g0538 557 ProSiteProfiles C2 domain profile. 235 358 IPR000008 -
Dere04g0538 557 FunFam Plant synaptotagmin 251 393 - -
Dere04g0538 557 SMART C2_3c 257 357 IPR000008 -
Dere04g0538 557 SMART C2_3c 433 531 IPR000008 -
Dere04g0538 557 CDD C2 434 534 - -
Dere04g0538 557 Pfam C2 domain 433 534 IPR000008 -
Dere04g0538 557 Pfam C2 domain 256 360 IPR000008 -
Dere04g0538 557 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 254 385 IPR035892 -
Dere04g0538 557 CDD SMP_SYT 60 242 - -
Dere04g0538 557 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 64 242 IPR039010 -
Dere04g0538 557 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 1 548 IPR045050 GO:0008289
Dere04g0538 557 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 59 243 IPR031468 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g0538 Dere-ChrDere04 5430917 5433964 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g0538 434 522 Lipid Metabolism Gene Families AT1G51570 35.955 2.07e-08 55.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere04g0538 04 5430917 5433964 Dere04g0538 04 5430917 5433964 ECH