Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g0660 ATGGGATTCTTCAGCGGCATGATCATTGGTATTGCGATTGGTATCACATTGATCATCGCTTTCGCTAAACAAGAAAGCACCCGATCCAAGCGTCGCACCGATTTGGCGAAGACGATAGCAAAGTTTGCGAGGTTAACGGTGGAAGATTCTAGAAAACTTCTACCTGAAAATTTTTATCCGTCATGGGTGGTCTTTTCTCAGAAACAAAAATTGAGTTCGTTAACTTGGCTTAACAGTTTATTAGATAAGATTTGGCCTTTCGTCGATGAGGCAGCATCAGAATTGATAAAAAACAATGTTGAACCTATTCTTGAACAATATAGACCGTTGATTTTGTCGTCTCTCACATTTTCCACATTGACACTTGGTACTGTTGCTCCACAATTTACAGGAATTTCAATTGTTGAAGAGGGTAGTGGGCCTACTGGAGTGACAATGGAGTTTGACATGCAGTGGGATGGCAACCCCAATATTGTTCTTGACATTAAAACCAGAGTTGGTGTTGTATTGCCTGTGCAGGTAAAAAATATTGGATTCACTGGGGTTTTCAGGTTGATCTTCAAACCTCTAGTAAATGATTTTCCTGCTTTTGGAGCTGTTTTATTTTCCCTAAGAGAAAAGAAAGCTCTTGATTTTACTCTTAAGGTTATTGGTGGTGATATTTCAGCCTTACCAGGGGTATCTGAAGCTATAGAGGAAACCATTCGAGATGCCATCGAAGACTCTATAACTTGGCCAGTACGCAAAATTATACCAATTATACCAGGAGATTACAGTAACCTGGAACTGAAACCTGTTGGAACACTAGATGTAAAACTAGTGCAAGCAAAGAACTTAACAAATAAAGATTTAATTGGGAAATCTGATCCTTTTGCTGTCGTATTTGTACGTCCACTTCGCGACAGAACCAAAACTAGTAAAACAATCAATAACCAGTTGAATCCAATATGGAATGAGCACTTTGAATTCATTATTGAAGATGCATCAACACAACACTTGACCATAAGAATCTTCGACGACGAAGGAATTCAGGCAGCTGAGCTTATTGGTTGTGCCCAAGTTTCCCTAAAGGAACTTGAACCTGGTAAAGTCAAGGTTGTATGGTTGAAATTAGTTAAGGATTTAGAGGTCCATAGAGATAACAAATACAGGGGTGAGGTGCACTTGGAGCTCTTGTACTGCCCATATGGAGTTGAGCACACTCTTAAGAGCCCTTTCCACACTGATTACTCATTAACCACGTTCGAAAAGACTCTCAAGAGCGACACAGAGGATGATGATATTTCAGCAGCATCATCACGAAGAAAAAGCAATGTAATTGTAAGAGGAGTTCTATCGGTCACTGTAATTTCAGCTGAAGACTTACCGGTAGTCGATTTAATGGGCAAGGCTGACCCGTTTGTTGTCCTTTCATTGAAAAAATCGGAAAAAAAACAAAAGACAAGAGTTGTAAATGAAAGTCTAAATCCAGTTTGGAATCAAACATTTGACTTCGTTGTAGAAGATGGCTTACACGACATGTTAATTGTTGAACTTTGGGATCATGATACATTTGGCAAGGAAAAAATGGGTAAAGTGATCATGACACTAACCAAAGTCATCTTAGAAGGGGAATACGACGAAACATTTGATTTGGATGATGCTAAATCCGGAAAGATTAATTTGCATTTAAGATGGGCTGCACAACATAAGTACCGTGACCCTTAA 1707 0.3919 MGFFSGMIIGIAIGITLIIAFAKQESTRSKRRTDLAKTIAKFARLTVEDSRKLLPENFYPSWVVFSQKQKLSSLTWLNSLLDKIWPFVDEAASELIKNNVEPILEQYRPLILSSLTFSTLTLGTVAPQFTGISIVEEGSGPTGVTMEFDMQWDGNPNIVLDIKTRVGVVLPVQVKNIGFTGVFRLIFKPLVNDFPAFGAVLFSLREKKALDFTLKVIGGDISALPGVSEAIEETIRDAIEDSITWPVRKIIPIIPGDYSNLELKPVGTLDVKLVQAKNLTNKDLIGKSDPFAVVFVRPLRDRTKTSKTINNQLNPIWNEHFEFIIEDASTQHLTIRIFDDEGIQAAELIGCAQVSLKELEPGKVKVVWLKLVKDLEVHRDNKYRGEVHLELLYCPYGVEHTLKSPFHTDYSLTTFEKTLKSDTEDDDISAASSRRKSNVIVRGVLSVTVISAEDLPVVDLMGKADPFVVLSLKKSEKKQKTRVVNESLNPVWNQTFDFVVEDGLHDMLIVELWDHDTFGKEKMGKVIMTLTKVILEGEYDETFDLDDAKSGKINLHLRWAAQHKYRDP* 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g0660 568 Pfam C2 domain 443 544 IPR000008 -
Tpr7g0660 568 Pfam C2 domain 267 371 IPR000008 -
Tpr7g0660 568 ProSiteProfiles C2 domain profile. 424 543 IPR000008 -
Tpr7g0660 568 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 75 253 IPR039010 -
Tpr7g0660 568 ProSiteProfiles C2 domain profile. 248 369 IPR000008 -
Tpr7g0660 568 CDD C2 445 545 - -
Tpr7g0660 568 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 70 254 IPR031468 GO:0008289
Tpr7g0660 568 PRINTS C2 domain signature 460 472 IPR000008 -
Tpr7g0660 568 PRINTS C2 domain signature 486 499 IPR000008 -
Tpr7g0660 568 PRINTS C2 domain signature 508 516 IPR000008 -
Tpr7g0660 568 PANTHER SYNAPTOTAGMIN-4 1 567 - -
Tpr7g0660 568 CDD C2 269 371 - -
Tpr7g0660 568 Gene3D C2 domain 427 561 IPR035892 -
Tpr7g0660 568 Gene3D C2 domain 259 395 IPR035892 -
Tpr7g0660 568 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 265 396 IPR035892 -
Tpr7g0660 568 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 1 567 IPR045050 GO:0008289
Tpr7g0660 568 SMART C2_3c 444 542 IPR000008 -
Tpr7g0660 568 SMART C2_3c 268 368 IPR000008 -
Tpr7g0660 568 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 379 551 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g0660 Tpr-Chr7 5812533 5817188 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g0660 269 561 Lipid Metabolism Gene Families AT4G00700 24.281 1.39e-13 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g0660 - - gmx:100787972 922.924
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr7g0660 7 5812533 5817188 Tpr7g0660 7 5812533 5817188 ECH