Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele02g0640 ATGTTGGTCGAAATATACGTAGGAGTGGCCATTGTTGAAGAAGAAAGTGGGGCTGCTGGAGTCACCATGGAATTGGAGATGCAATGGGATGGTAACCCCACTATAGCATTTGATGTTAAAACTCGACATGGAGTTGTAATACCTGTTAAGAGACTAAACTTTTTCATAAACATGGACTTTACTCTTACGGTTTCTGGTGGTGATATTTCAGCGCTACGAGGCGTATCTGATGCTATAGAGAACAACGAGTTGAATACGGTATGGAACGAGAACTTCGAGTTCACCGTGGAAGATGCATCAACTCAGCACTTGACTGTAAGAATATTTGATGATGAAGTCGTTGGGGCTGACCAGCTCATTGGGTGTGCCCAAGTGCCATTAACGGACCTTCAGCCTGGAAAAGTTGAGACCTTCTGGTTGAATCTGGTCAAGGATTTGGAGGTCCAAAGAGACCAAAAATACAGGGGTGAGACGATTAAGAGTGCATCTGATCAGACAGAGGGAAGTGATGTTAACAAATCACAGAGGAAATATGTGATAGGGAGAGGATTATTATCTGTGACAGTGATATCAGCTGAAGAATTACCAAATGTGGACTTACTGGGGAAAACTAACGCTTTTGTTGAACTCGTGTTGAAGAAAGCAGACCAAAAACACAGGACCAGGGTTGTAACTTCAGGAGTAAACCCTGTTTGGAATCAAACATTTGACTTCGCTGTGGAGGATGTGTTACATGAAATGCTAATTCTTGAAGGCTGGGATCAAGATCTCATCGGGAAGAAAAGGAAGTTGAGGATAGTTTTGCGTGAGATGGCGCCAAATATGGGAAACTTAACCTGCCTCTCTGCTGGACTCCACAACTCATGTATCGAGATCCTTGATGGAACGAATCAATAG 897 0.4326 MLVEIYVGVAIVEEESGAAGVTMELEMQWDGNPTIAFDVKTRHGVVIPVKRLNFFINMDFTLTVSGGDISALRGVSDAIENNELNTVWNENFEFTVEDASTQHLTVRIFDDEVVGADQLIGCAQVPLTDLQPGKVETFWLNLVKDLEVQRDQKYRGETIKSASDQTEGSDVNKSQRKYVIGRGLLSVTVISAEELPNVDLLGKTNAFVELVLKKADQKHRTRVVTSGVNPVWNQTFDFAVEDVLHEMLILEGWDQDLIGKKRKLRIVLREMAPNMGNLTCLSAGLHNSCIEILDGTNQ 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele02g0640 298 ProSiteProfiles C2 domain profile. 165 291 IPR000008 -
Lele02g0640 298 Gene3D C2 domain 165 276 IPR035892 -
Lele02g0640 298 CDD C2 82 142 - -
Lele02g0640 298 ProSiteProfiles C2 domain profile. 17 140 IPR000008 -
Lele02g0640 298 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 10 55 IPR045050 GO:0008289
Lele02g0640 298 Gene3D C2 domain 58 160 IPR035892 -
Lele02g0640 298 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 176 263 IPR035892 -
Lele02g0640 298 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 59 145 IPR035892 -
Lele02g0640 298 CDD C2 185 264 - -
Lele02g0640 298 Pfam C2 domain 79 142 IPR000008 -
Lele02g0640 298 Pfam C2 domain 183 262 IPR000008 -
Lele02g0640 298 SMART C2_3c 41 139 IPR000008 -
Lele02g0640 298 SMART C2_3c 184 280 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele02g0640 Lele-ChrLele02 3833514 3836114 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele02g0640 80 242 Lipid Metabolism Gene Families AT5G12970 26.064 5.08e-08 52.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele02g0640 02 3833514 3836114 Lele25g0631 25 3981205 3983952 CCT
Lele02g0640 02 3833514 3836114 Lele26g0642 26 4077546 4079954 CCT
Lele02g0640 02 3833514 3836114 Lele27g1457 27 20701572 20704112 CCT
Lele02g0640 02 3833514 3836114 Lele28g0626 28 3994453 3996857 CCT
Lele02g0640 02 3833514 3836114 Lele02g0640 02 3833514 3836114 ECH
Lele02g0640 02 3833514 3836114 Lele03g0652 03 3826537 3829315 hybridization
Lele02g0640 02 3833514 3836114 Lele04g0659 04 3983505 3987184 hybridization