Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g0880 ATGGGCTTCTTCAGCGGCATGTTCTTTGGCATCTTATTTGGTGTCGGCTTTATCGTCGCTTTTGCTCGTTATGAAGCAAGCCGATCCAGGCGTCGCTCTGATTTGGCGAAAGCGGTGGCTGCTTTTGCAAGGATAACAGTCGACGATTCCAGAAAAATCCTGCCACCTAAGTTCTATCCACCTTGGGTGTTAGATTGGCTCAATTGCGCACTCGAAAAACTTTGGCCATTTGTTGATCAGGCAGCATCGGAGTTGATAAGAACCAGCGTGGAACCTATACTTGAACAACATACACCGGCTATCTTAGCTTCTCTCACGTTCTCTAAGTTGACTCTTGGTACTGTGGCTCCACAATTTACAGGGATTTCGATTCTTGAAGAAGAATGCTGGAATGATGGAGTGACTATGGAGTTAGAAATGAAGTGGGATGGTAACCCAAATATCGTACTTGATATTAATACTCATATTGGTGTTTCACTACCAGTTCagGTAAAAGATCTTGCATTCACTGGAGTTTTCAGATTGATGTTCAGCCCACTAGTAGACGAATTTCCTGGTTTTGGAGCTATTTGTTACTCTTTGTTTCAAAAGAAAGATCTGGATTTCACTCTCAAGGTTATTGGTGGTGATATTTCAAGTATCCCAGGGGTATCTGATGCTATAGAGGAAACAATTAGGGATGCTATTGAAGATACAATAACTTGGCCAGTACGCAATATCGTACCAATTATACCAGGGGATTACAGTCACCTGGAGTTGAAAGCGGAAGGAACACTAGAAGTAAAACTAGTGCAAGCGAAGGGACTAACAAACAAAGAACTTATTGGCAAATCCGATCCTTTTGCTACATTATTTGTGCGTCCGCTTCGTGACAGAAccaaaaaaagtaaaacaatCAATAATGACTTGAATCCAGTATGGAACGAGCACTTCGAGTTCATTGTTGAAGATTCTTCTTCACAGAAATTGACGGTAAGAGTTTTTGATGATGACGGCATTCAGGATGCAGAGTTTTTAGGCACTGCCCAAGTGCAGCTAAAGGAACTTGAACCTGGTAAAGTCAAAGAATTTTGGTTAAAACTGGTTAAGGACTTGGGGGTTCAAAGAGACAACAAATACAGGGGCGAGGTGCACTTGGAGCTCTTGTACATCCCAATTGGCCAGGAGAATAACTTTTCAAACCCTTTCAATCCTGACTACTCGTTAACCGCTTACGAGAGGACCCTTAAGGGTAAGGGTAGTGACGCAGTGGAAGTAGTACCGAAGAAAAATGTTATTGTTAGAGGGGTACTTTCCGTGACAGTTATATCTGCCGAAGACTTGCCAGCTGTGGACTTTATGGGCAAGGCTGACCCTTTTGTGGTCGTTATGTTGAAAAAATCTGAAAAAAAACAGAAGACTAGGGTTGTAAACGAATGCCTAAACCCAGTGTGGAATCAAACATTTGACTTTGTTGTGGAGGATGCTTTACATGACTTATTAATTGTTGAAGTCTGGGATCATGATACTTTTGGAAAGGACAAAATTGGAAGAGTCATCTTGACACTCACTAAAGCTATCTTAAAAGGGGAAATGCAGGAGACGTTTACTCTAGGTGGTTCTGCTTCTGCATCCGGAAGGATTAATTTGCATATTAGGTGGAACCCACAGCACAAGATTCGGGATCAGTAA 1671 0.4171 MGFFSGMFFGILFGVGFIVAFARYEASRSRRRSDLAKAVAAFARITVDDSRKILPPKFYPPWVLDWLNCALEKLWPFVDQAASELIRTSVEPILEQHTPAILASLTFSKLTLGTVAPQFTGISILEEECWNDGVTMELEMKWDGNPNIVLDINTHIGVSLPVQVKDLAFTGVFRLMFSPLVDEFPGFGAICYSLFQKKDLDFTLKVIGGDISSIPGVSDAIEETIRDAIEDTITWPVRNIVPIIPGDYSHLELKAEGTLEVKLVQAKGLTNKELIGKSDPFATLFVRPLRDRTKKSKTINNDLNPVWNEHFEFIVEDSSSQKLTVRVFDDDGIQDAEFLGTAQVQLKELEPGKVKEFWLKLVKDLGVQRDNKYRGEVHLELLYIPIGQENNFSNPFNPDYSLTAYERTLKGKGSDAVEVVPKKNVIVRGVLSVTVISAEDLPAVDFMGKADPFVVVMLKKSEKKQKTRVVNECLNPVWNQTFDFVVEDALHDLLIVEVWDHDTFGKDKIGRVILTLTKAILKGEMQETFTLGGSASASGRINLHIRWNPQHKIRDQ 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g0880 556 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 60 244 IPR031468 GO:0008289
Sto5g0880 556 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 1 555 IPR045050 GO:0008289
Sto5g0880 556 SMART C2_3c 430 528 IPR000008 -
Sto5g0880 556 SMART C2_3c 258 358 IPR000008 -
Sto5g0880 556 Pfam C2 domain 257 361 IPR000008 -
Sto5g0880 556 Pfam C2 domain 429 529 IPR000008 -
Sto5g0880 556 PRINTS C2 domain signature 446 458 IPR000008 -
Sto5g0880 556 PRINTS C2 domain signature 472 485 IPR000008 -
Sto5g0880 556 PRINTS C2 domain signature 494 502 IPR000008 -
Sto5g0880 556 Gene3D C2 domain 426 555 IPR035892 -
Sto5g0880 556 Gene3D C2 domain 254 394 IPR035892 -
Sto5g0880 556 PANTHER SYNAPTOTAGMIN-4 1 555 - -
Sto5g0880 556 CDD C2 431 527 - -
Sto5g0880 556 ProSiteProfiles C2 domain profile. 411 529 IPR000008 -
Sto5g0880 556 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 256 387 IPR035892 -
Sto5g0880 556 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 424 550 IPR035892 -
Sto5g0880 556 ProSiteProfiles C2 domain profile. 238 359 IPR000008 -
Sto5g0880 556 CDD C2 259 361 - -
Sto5g0880 556 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 65 244 IPR039010 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g0880 Sto-Chr5 5874645 5880651 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g0880 394 518 Lipid Metabolism Gene Families AT3G61300 31.008 1.75e-08 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g0880 - - gmx:100787972 814.298
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g0880 5 5874645 5880651 Sto5g0880 5 5874645 5880651 ECH