Hierarchical alignments with the P. vulgaris genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Pvu Acco Accr Adu Aed Aev Ahy_1 Ahy_2 Aip Alju Amo_1 Amo_2 Apr Arst Bach Bisa Bva Car Cca Dere Dod Enph Glsi Gma_1 Gma_2 Gso_1 Gso_2 Lal_1 Lal_2 Lal_3 Lan_1 Lan_2 Lan_3 Lapu Lasa Lele_1 Lele_2 Lele_3 Lele_4 Lja Mal Mepo Mesa Mibi Mtr Phac Phco Prci Psa Pste Pumo Rops Seca Spst Ssu Sto Tpr Trre Tsu Vian Vifa Vimu Viun Vivi Vra
Pvu10g0709 . . Adu02g02127 Aed2g0982 Aev02g1958 Ahy12g2211 Ahy2g1920 Aip02g02476 . . . Apr10g0847 Arst2g02763 Bach6g01826 . Bva02g00495 Car06g02927 Cca01g02010 . Dod07g1670 . . . Gma01g01353 Gso1g1121 Gso3g0310 Lal14g0808 . . Lan12g0181 . . . . . . . . Lja3g3811 Mal7g0907 Mepo2g00846 . . Mtr4g0810 . Phco1g01104 . . Pste6g00282 Pumo7g01736 Rops4g01148 . . Ssu4g2494 . Tpr4g1036 . Tsu06g00751 . Vifa2g05029 Vimu9g00960 Viun10g01432 . .
Pvu10g0710 . . . Aed2g0981 . . . . . Amo12g2331 . Apr10g0848 Arst2g02609 . . Bva02g00496 . . . . . . . Gma01g01355 Gso1g1122 Gso3g0309 . . . . . . . . . . . . . . . . . . . . . . . . . . . Ssu4g2495 . . . . . . . . . .
Pvu10g0711 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu10g0712 . . Adu02g01996 Aed2g0980 Aev02g1959 Ahy12g2071 Ahy2g1806 Aip02g02312 . . . Apr10g0849 Arst2g02765 . . Bva02g00497 Car06g02929 Cca01g02011 . Dod07g1671 . . . Gma01g01356 Gso1g1123 Gso3g0308 Lal14g0810 . Lal19g0295 Lan12g0179 Lan1g0713 . . Lasa7g00712 . . . . Lja3g3813 Mal7g0905 Mepo2g00845 Mesa13g04512 . Mtr4g0809 . Phco1g01376 . . Pste6g00273 Pumo7g01739 Rops4g01150 Seca4g10944 . Ssu4g2496 . Tpr4g1035 Trre7g00814 Tsu06g00750 Vian9g00897 Vifa2g05030 Vimu9g00963 Viun10g01439 Vivi5g01316 .
Pvu10g0713 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu10g0714 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu10g0715 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu10g0716 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu10g0717 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu10g0718 . . Adu02g02131 Aed2g0977 Aev02g1961 Ahy12g2213 Ahy2g1922 . . Amo12g2500 . Apr10g0851 Arst2g02767 Bach6g01828 . Bva02g00499 Car06g02930 Cca01g02016 . Dod07g1673 . . Gma03g00702 Gma01g01359 Gso1g0948 . . . Lal19g0293 Lan12g0178 Lan1g0716 . . Lasa7g00703 . . . . Lja3g3814 Mal7g0903 . Mesa13g04517 . Mtr4g0803 . . . Psa7g5381 . Pumo7g01743 . Seca4g10946 . Ssu4g2498 . Tpr4g1032 Trre7g00808 Tsu06g00746 Vian9g00896 Vifa2g05036 . Viun10g01440 Vivi5g00939 .
   
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Select Species Gene Chromosome Start End Strand
Vifa Vifa2g05029 Chr2 1494945121 1494946530 +
Vivi Vivi5g00939 Chr5 20642266 20643079 +
Pvu Pvu10g0709 Chr10 17138649 17144933 +
Adu Adu02g02127 Chr02 85026791 85032963 +
Aed Aed2g0982 Chr2 7726975 7728402 -
Aev Aev02g1958 Chr02 21394344 21399246 +
Ahy Ahy12g2211 Chr12 108372015 108386889 +
Ahy Ahy2g1920 Chr2 93137042 93143078 +
Aip Aip02g02476 Chr02 98683005 98693038 +
Apr Apr10g0847 Chr10 20798844 20804830 +
Arst Arst2g02763 Chr2 84432535 84435502 -
Bach Bach6g01826 Chr6 29356341 29360068 +
Bva Bva02g00495 Chr02 6331646 6335929 +
Car Car06g02927 Chr06 47926544 47931344 +
Cca Cca01g02010 Chr01 46979361 46988342 +
Dod Dod07g1670 Chr07 44515974 44520755 +
Gma Gma01g01353 Chr01 47113673 47119913 +
Gso Gso1g1121 Chr1 45458492 45460087 +
Gso Gso3g0310 Chr3 4623736 4630359 -
Lal Lal14g0808 Chr14 10177956 10184186 +
Lan Lan12g0181 Chr12 2700644 2707857 -
Lja Lja3g3811 Chr3 75161560 75170718 +
Mal Mal7g0907 Chr7 24849286 24853426 -
Mepo Mepo2g00846 Chr2 10734998 10740904 -
Mtr Mtr4g0810 Chr4 10430230 10431671 -
Phco Phco1g01104 Chr1 13239119 13245411 -
Pste Pste6g00282 Chr6 949190 957886 -
Pumo Pumo7g01736 Chr7 45779685 45791517 +
Rops Rops4g01148 Chr4 30974471 30979999 +
Ssu Ssu4g2494 Chr4 62910451 62916736 +
Tpr Tpr4g1036 Chr4 9991764 9996264 -
Tsu Tsu06g00751 Chr06 6648368 6653807 -
Vifa Vifa2g05029 Chr2 1494945121 1494946530 +
Vimu Vimu9g00960 Chr9 16113923 16119144 +
Viun Viun10g01432 Chr10 28670288 28676980 +
Pvu Pvu10g0710 Chr10 17219157 17226224 +
Aed Aed2g0981 Chr2 7718323 7724466 -
Amo Amo12g2331 Chr12 104994140 104998020 -
Apr Apr10g0848 Chr10 20811017 20815865 +
Arst Arst2g02609 Chr2 82071043 82074018 -
Bva Bva02g00496 Chr02 6340421 6343830 +
Gma Gma01g01355 Chr01 47198860 47204363 +
Gso Gso1g1122 Chr1 45576420 45581844 +
Gso Gso3g0309 Chr3 4600291 4605545 -
Ssu Ssu4g2495 Chr4 62971650 62976051 +
Pvu Pvu10g0711 Chr10 17227791 17227940 +
Pvu Pvu10g0712 Chr10 17307323 17314376 +
Adu Adu02g01996 Chr02 82621972 82624950 -
Aed Aed2g0980 Chr2 7712016 7717868 -
Aev Aev02g1959 Chr02 21401511 21405541 +
Ahy Ahy12g2071 Chr12 105219727 105222783 -
Ahy Ahy2g1806 Chr2 90848449 90851808 -
Aip Aip02g02312 Chr02 95681895 95684870 -
Apr Apr10g0849 Chr10 20827893 20834333 +
Arst Arst2g02765 Chr2 84501897 84506785 +
Bva Bva02g00497 Chr02 6345630 6350570 +
Car Car06g02929 Chr06 47996377 48002906 +
Cca Cca01g02011 Chr01 47012247 47018335 +
Dod Dod07g1671 Chr07 44528107 44534718 +
Gma Gma01g01356 Chr01 47222375 47229170 +
Gso Gso1g1123 Chr1 45602412 45609064 +
Gso Gso3g0308 Chr3 4587145 4594462 -
Lal Lal14g0810 Chr14 10207488 10215833 +
Lal Lal19g0295 Chr19 2969427 2976787 -
Lan Lan12g0179 Chr12 2638189 2644588 -
Lan Lan1g0713 Chr1 16220085 16227280 +
Lasa Lasa7g00712 Chr7 44012597 44016156 -
Lja Lja3g3813 Chr3 75178878 75186326 +
Mal Mal7g0905 Chr7 24784313 24791121 -
Mepo Mepo2g00845 Chr2 10712798 10719903 -
Mesa Mesa13g04512 Chr13 71124117 71133186 +
Mtr Mtr4g0809 Chr4 10407813 10415411 -
Phco Phco1g01376 Chr1 39806765 39811249 -
Pste Pste6g00273 Chr6 920790 923990 -
Pumo Pumo7g01739 Chr7 45805412 45811256 +
Rops Rops4g01150 Chr4 31034531 31040591 +
Seca Seca4g10944 Chr4 247178662 247184796 +
Ssu Ssu4g2496 Chr4 62986452 62992260 +
Tpr Tpr4g1035 Chr4 9982160 9989223 -
Trre Trre7g00814 Chr7 5390947 5395956 -
Tsu Tsu06g00750 Chr06 6633213 6639242 -
Vian Vian9g00897 Chr9 15858571 15863485 -
Vifa Vifa2g05030 Chr2 1495298853 1495302339 +
Vimu Vimu9g00963 Chr9 16160848 16170148 +
Viun Viun10g01439 Chr10 28725886 28732345 +
Vivi Vivi5g01316 Chr5 35868632 35873187 -
Pvu Pvu10g0713 Chr10 17352245 17352518 +
Pvu Pvu10g0714 Chr10 17352988 17353770 +
Pvu Pvu10g0715 Chr10 17374778 17375721 +
Pvu Pvu10g0716 Chr10 17375944 17376243 +
Pvu Pvu10g0717 Chr10 17376984 17377670 -
Pvu Pvu10g0718 Chr10 17454685 17456340 +
Adu Adu02g02131 Chr02 85064126 85065669 +
Aed Aed2g0977 Chr2 7697486 7698480 -
Aev Aev02g1961 Chr02 21418770 21419607 +
Ahy Ahy12g2213 Chr12 108419342 108420835 -
Ahy Ahy2g1922 Chr2 93167864 93169391 +
Amo Amo12g2500 Chr12 108293769 108295464 +
Apr Apr10g0851 Chr10 20861696 20862568 +
Arst Arst2g02767 Chr2 84525672 84527289 +
Bach Bach6g01828 Chr6 29374477 29374821 +
Bva Bva02g00499 Chr02 6361626 6362635 +
Car Car06g02930 Chr06 48068002 48068927 +
Cca Cca01g02016 Chr01 47061971 47063513 +
Dod Dod07g1673 Chr07 44575043 44575393 +
Gma Gma03g00702 Chr03 22503381 22505537 +
Gma Gma01g01359 Chr01 47334683 47336332 +
Gso Gso1g0948 Chr1 38440470 38468759 -
Lal Lal19g0293 Chr19 2941268 2942683 -
Lan Lan12g0178 Chr12 2625293 2628032 -
Lan Lan1g0716 Chr1 16322797 16323820 +
Lasa Lasa7g00703 Chr7 43110033 43110495 +
Lja Lja3g3814 Chr3 75209141 75209770 +
Mal Mal7g0903 Chr7 24757211 24758044 -
Mesa Mesa13g04517 Chr13 71206044 71206852 +
Mtr Mtr4g0803 Chr4 10353912 10355033 -
Psa Psa7g5381 Chr7 464719971 464720463 -
Pumo Pumo7g01743 Chr7 45878024 45878308 +
Seca Seca4g10946 Chr4 247211492 247212202 +
Ssu Ssu4g2498 Chr4 63056607 63058158 +
Tpr Tpr4g1032 Chr4 9936964 9938722 -
Trre Trre7g00808 Chr7 5356366 5358240 -
Tsu Tsu06g00746 Chr06 6598293 6599572 -
Vian Vian9g00896 Chr9 15835013 15836118 -
Vifa Vifa2g05036 Chr2 1497255320 1497255779 +
Viun Viun10g01440 Chr10 28764343 28765162 +
Vivi Vivi5g00939 Chr5 20642266 20643079 +