Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g01104 ATGTGCACTGGTGCTGAATCTCGAGGAAATATAAATGGTGAGCCTGTGATTCCAAAGGTGGGAGGAGACTATGAGGGTAATAGAATGAGAACCATAGAAGGTGGAGAAAGAGCTTGCAACTGTGGAACATTTTTTCAAGGTCTTCTTCAACGCCTTCATCACCTTCTCACTGCCCTTAATCTTCATATTTCTGCTTCTGAGTTGAAAGAAGAGTTGCAATCTCTTGCAAAGGTTGCATGTCCCATAATAATGACTAGCCTAATGATGTACTCTCGATCTGCTGTGTCCATATTGTTTTTGGGTCGGCAAGGGAAAGTAGAGCTAGCAGGAGGCTCACTAGCACTTGGATTTGCCAACATAACTGCAAATTCAGTTCTCAAAGGCCTCACAATGGGAATGGACCCAATTTGTTGCCAAGCTTTTGGAGCAAAGAGATGGTCAGTTCTCAACCAAACCTTTTTCAGAACTATATGTCTCCTCCTACTTGTTGCCATACCCATTTCAATTTTATGGCTAAACATGGAACCCATCCTTCAAATGCTAGGTCAAGACCCTGAAGTCACAAAAGTTGCCCAAGTTTATATGGTTTTCTCTATTCCAGAGTTGCTAGCTCAGGCTCATCTTAACCCATTGAGGACCTTCTTAAGAACCCAAGGCTTAACCACCCCAGTCACTATAGCTGCATCTTGTGCAGCACTCTTGCACCTTCCCATCAACTATTTCTTGGCCACATACTTGAACTTAGGGGTAAAGGGTATTGCTTTAGCCACTGGTTTGAACTCGATAAACATGACTTTGGGCTTGCTGCTCTATGTTTTCTTCTCAAATAAACCACTAAAACCCTGGGAAGGAGCAACTATTCTCTCAGCCTTTCATGGGTGGAAACCATTGTTGAGTTTGGCACTGCCTAGTTGCATTTCAGTGTGCTTGGAGTGGTGGTGGTATGAGATAATGCTCTTTCTATGTGGTTTGTTGAGCAATCCACAAGCCACCATTGCTACCATGGGGATCCTTATTCAAACACTTGGCTTCTTGTATGTATTCCCGTTTTCCCTAAGTATAGCCTTGACAACAAGAATTGGTCACTCGTTAGGTGCAGGGCAAGCATCCAAGGCCCAAAGTACAGCCATAATTGGGTTCATGGCAGCATTTACTTCGGCGATCGCTGCCTTCATTTTGTTGTTTTTTGTGAGGAAATCATGGGGGAAACTTTTCACTGATGAGACACAAATTATTGATTTGGTCACAACTATACTTCCCATTCTTGGTCTGTGTGAGATCAGCAATTGGCCTCAAACAGTTTCATGTGGGATTTTGTCAGGAACTGCTAGGCCTTATCTGGGTGCTAGAATAAACTTGTGTGCATTCTACCTAGTAGGATTGCCAGTTTCTGTTTTTGCCACTTTCATATACAAGTATGAATTGGTGGGTTTGTGGTCTGGAATGGTTGCTGCACAGGCTTCTTGTCTATGCATGATGGTGTACACATTGATTCAAACAGATTGGGGGCAGCAATGTAAGAGGGCAGTGGAACTAGCTCAGAAAACAACAGATCAGGAAAATAAAAATGATGAGGAAAGTGGGTTACTTGGTTCTGATCAATAA 1605 0.4299 MCTGAESRGNINGEPVIPKVGGDYEGNRMRTIEGGERACNCGTFFQGLLQRLHHLLTALNLHISASELKEELQSLAKVACPIIMTSLMMYSRSAVSILFLGRQGKVELAGGSLALGFANITANSVLKGLTMGMDPICCQAFGAKRWSVLNQTFFRTICLLLLVAIPISILWLNMEPILQMLGQDPEVTKVAQVYMVFSIPELLAQAHLNPLRTFLRTQGLTTPVTIAASCAALLHLPINYFLATYLNLGVKGIALATGLNSINMTLGLLLYVFFSNKPLKPWEGATILSAFHGWKPLLSLALPSCISVCLEWWWYEIMLFLCGLLSNPQATIATMGILIQTLGFLYVFPFSLSIALTTRIGHSLGAGQASKAQSTAIIGFMAAFTSAIAAFILLFFVRKSWGKLFTDETQIIDLVTTILPILGLCEISNWPQTVSCGILSGTARPYLGARINLCAFYLVGLPVSVFATFIYKYELVGLWSGMVAAQASCLCMMVYTLIQTDWGQQCKRAVELAQKTTDQENKNDEESGLLGSDQ 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g01104 534 NCBIfam MATE family efflux transporter 81 479 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Phco1g01104 534 PANTHER MULTIDRUG RESISTANCE PROTEIN 67 502 - -
Phco1g01104 534 CDD MATE_eukaryotic 71 508 IPR045069 GO:0042910|GO:1990961
Phco1g01104 534 Pfam MatE 303 465 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Phco1g01104 534 Pfam MatE 81 241 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g01104 Phco-Chr1 13239119 13245411 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g02356 3 50182299 50186430 Phco1g01104 1 13239119 13245411 PCT