Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g02010 ATGTGCACCGGTGCTGAATCTCGAGGAAATATAAATGGTGAGGTTGTGATTTCGAAGGCGGGGGGAGACTATGAAGATAGAATGAGAACCAGTACTACAGAAGGTGGTGGAGAAAGTGGTTGCAATAACTGTGGCACATTCGTTCAAGGTCTTCTTCAACGCCTGCATCCTCATCTCACTGCTCTTAATCTCCCTAGCTTTTCTGCTTCTGAGTTGAAAGAAGAGTTGGAATCACTTGCAAAGGTTTCATGCCCCATAATAATGACAAGCCTAATGATGTATTCTCGATCTGCTGTGTCCATGTTGTTCTTGGGTCGGCAAGGAAAAGTAGAGTTAGCAGGAGGGTCACTAGCACTTGGATTTGCTAACATCACTGCAAATTCAGTCCTCAAAGGCCTCTCAATGGGAATGGATCCAATTTGTTGCCAAGCTTATGGAGCCAAGAGATGGTCAATTCTTAACCAAACCTTTTTTAGAACTCTATGTCTCCTCCTACTTGTTGCCATCCCCATTTCCGTTTTGTGGCTAAACATGGAACCCATCCTTCAAATGCTCGGTCAAGACCCTCAAGTCACAAAAGTTGCCCAAGTTTACATGGTCTTCTCTATCCCAGAGTTGCTAGCTCAGGCTCATCTTAATCCTCTCAGATCCTTCTTGAGAACCCAAGGCTTAACCACCCCAGTCACCATAGCTGCATCTTGTGCAGCACTCTTGCATCTTCCCATCAACTATTTCTTGGCCACATATTTAAACTTAGGAGTAAAGGGTATTGCACTAGCCACTGGCTTGAACTCAATCAACATGACTCTAGGCTTGTTGCTTTATGTTTTCTTCTCAAAGAAACCACTCAAGCCATGGCAAGGAGCTACAACCACAATTCTCTCAGCCTTTCATGGGTGGAAGCCTTTGCTAAGTTTGGCTTTGCCTAGTTGCCTTTCAGTGTGCTTGGAGTGGTGGTGGTATGAGATCATGCTCTTTCTATGTGGCCTTTTAAGTAATCCACAAACCACAGTTGCCACCATGGGGATCCTTATTCAAACACTAGGGTTCTTGTATGTGTTCCCCTTTTCTCTAAGCATAGCCTTGACAACAAGAATTGGTCACTCATTAGGTGCAGGGCAAGCATCCAAGGCACAACGTACAGCCATAATTGGTTTCATCACTGCATTCACCTTGGGAATCTCTGCCTTCATTTTGCTTTTCTTTGTGAGAAAATCATGGGGGAAACTTTTCACTGATGAGATGCAAATTATTGAGATGGTCACAACTATACTTCCTATTCTTGGGTTGTGTGAGGTTAGCAACTGGCCTCAAACAGTTTCATGTGGGATTTTGTCAGGGACTGCAAGACCTTATTTGGGTGCTAGAATAAACTTATGTGCATTTTACCTTGTTGGGTTGCCAGTTTCTGTTTTTGCTTCCTTCATATACAAATATGAGTTGGTGGGTTTGTGGTCAGGAATGGTGGCTGCACAAGCTTCTTGTCTTTGCATGATGGTTTACACATTGATTCAAACAGATTGGGGGCAACAATGTAAGAGAGCAGTGGAACTGGCTCAGAAAACAACAGAACAGGACAATAAAAATGATGAGGAAAATGGGTTGCTTAACTCTGATCAATGA 1623 0.435 MCTGAESRGNINGEVVISKAGGDYEDRMRTSTTEGGGESGCNNCGTFVQGLLQRLHPHLTALNLPSFSASELKEELESLAKVSCPIIMTSLMMYSRSAVSMLFLGRQGKVELAGGSLALGFANITANSVLKGLSMGMDPICCQAYGAKRWSILNQTFFRTLCLLLLVAIPISVLWLNMEPILQMLGQDPQVTKVAQVYMVFSIPELLAQAHLNPLRSFLRTQGLTTPVTIAASCAALLHLPINYFLATYLNLGVKGIALATGLNSINMTLGLLLYVFFSKKPLKPWQGATTTILSAFHGWKPLLSLALPSCLSVCLEWWWYEIMLFLCGLLSNPQTTVATMGILIQTLGFLYVFPFSLSIALTTRIGHSLGAGQASKAQRTAIIGFITAFTLGISAFILLFFVRKSWGKLFTDEMQIIEMVTTILPILGLCEVSNWPQTVSCGILSGTARPYLGARINLCAFYLVGLPVSVFASFIYKYELVGLWSGMVAAQASCLCMMVYTLIQTDWGQQCKRAVELAQKTTEQDNKNDEENGLLNSDQ 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g02010 540 PANTHER PROTEIN DETOXIFICATION 53 59 525 - -
Cca01g02010 540 MobiDBLite consensus disorder prediction 521 540 - -
Cca01g02010 540 Pfam MatE 85 245 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Cca01g02010 540 Pfam MatE 309 471 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Cca01g02010 540 CDD MATE_eukaryotic 75 514 IPR045069 GO:0042910|GO:1990961
Cca01g02010 540 PANTHER MULTIDRUG RESISTANCE PROTEIN 59 525 - -
Cca01g02010 540 TIGRFAM matE: MATE efflux family protein 85 485 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g02010 Cca-Chr1 46979361 46988342 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g02010 K03327 - gmx:106798137 979.548
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g02010 01 46979361 46988342 Cca01g02010 01 46979361 46988342 ECH
Cca07g01739 07 43620077 43626572 Cca01g02010 01 46979361 46988342 PCT