Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g02011 ATGGGGGAGCATGTAGCAGCGTTGCACACTGCTACCAATGCTTTGCAAGCATTAGGGAGGGGCTTTGATGTGAACTTTGATACGAGGTTGCTTTATTGTAAAGGAGTTTCAGGGTCTAGGGTAGTTGAGATTGATGAAGAACACCGTAGGGAGCTGTGGTTGTACGAGGATTTGGCTGTTCCTGACGTTTCCAGGGACATTGGAAGCTCTCAGGAGCCTATGGTGCGTCAGAGTTCTGGAGTACGGAGTTTCCGAGAGATGGTGGAATACTTTAATGATAGGGCAAATATATCAGGGAGCTTTCCTCTTGGGAGCTTTAACTCTGCATTTAGCTTCACTGGTTCTAAACATGTTGATGATGCAGCCACAAAAACTTTGTCTTCAGATGGGTTTTACATTCCTCTGGCAAAGGTTCAGCTTAAAAAATCCCACTTAACGTTGCAAGAAAATGTCAAAAGGGCTGTTCCTGCCAATTGGGACCCACCGTCCTTGGCAAGTTTTATTGAAAATTTTGGAACTCATGTTATTACGTCAATAACTATTGGTGGTAAAGATGTTATTTATGTTAAACAACACCATACTTCTCCTTTGTCAAAGCTGGAGATGAAAAATTATATTCAGGATATTGGAAATCAGAGGTTTTCTGACATCAATAGCCATACAAGTTCAGGGCAAACAAAATCCAAGGATAAGGGTGTTGATCCATTTTCATTCAATAGTCAAGGGGTTTACCCTCAACCCACAACTGCAACATATCCTACTGGGAAAGAAGATGTTACAGTCATTTTTAGAAGAAGAGGAGGAGATGATTTGGAGCAAAACCACAATAAATGGTTAAAAACTGTCAAGTCCTCCCCAGATATCATTGAGATGACTTTCTGTCCTATAATTGATCTCCTTGATGAAATACCTACCAAGGAGCATTTGATTCGTGCCATTGGTCTTTATCTTGAATATAAACCTCCAATTGAAGAACTTAGATATTTCCTAGAGTTTCAGCTTCCTTGTGTATGGGCTCCTTTACAAGACAGGATACCTGGTCAACAAAGGAAGGAACCTGTGTGCCCATCTTTGCAATTCAGCATAATGGGCCAGAAACTTTACGTCAGTCAAGAACAGGTAAAAGGTCATTTTGGCATTTTGCTTCACTCAGAAACTTATTCCATGACAACGATTCTTTTAAAGAAATGTAAAGTAATTACTGTTTGTGGGTACATACGGCAGTTCCCTTCTTTTGTTTTCAAGCTTTTCTTCCTTGAGAATGGGGGCATTAGGTTTATTATTGTGTGTTTCTAA 1296 0.4028 MGEHVAALHTATNALQALGRGFDVNFDTRLLYCKGVSGSRVVEIDEEHRRELWLYEDLAVPDVSRDIGSSQEPMVRQSSGVRSFREMVEYFNDRANISGSFPLGSFNSAFSFTGSKHVDDAATKTLSSDGFYIPLAKVQLKKSHLTLQENVKRAVPANWDPPSLASFIENFGTHVITSITIGGKDVIYVKQHHTSPLSKLEMKNYIQDIGNQRFSDINSHTSSGQTKSKDKGVDPFSFNSQGVYPQPTTATYPTGKEDVTVIFRRRGGDDLEQNHNKWLKTVKSSPDIIEMTFCPIIDLLDEIPTKEHLIRAIGLYLEYKPPIEELRYFLEFQLPCVWAPLQDRIPGQQRKEPVCPSLQFSIMGQKLYVSQEQVKGHFGILLHSETYSMTTILLKKCKVITVCGYIRQFPSFVFKLFFLENGGIRFIIVCF 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g02011 431 MobiDBLite consensus disorder prediction 216 250 - -
Cca01g02011 431 SMART MACPF_8 123 318 IPR020864 -
Cca01g02011 431 ProSiteProfiles Membrane attack complex/perforin (MACPF) domain profile. 1 330 IPR020864 -
Cca01g02011 431 PANTHER MACPF DOMAIN-CONTAINING PROTEIN CAD1-LIKE 6 375 - -
Cca01g02011 431 PANTHER MACPF DOMAIN-CONTAINING PROTEIN CAD1 6 375 IPR044663 GO:0006952|GO:0012501|GO:2000031
Cca01g02011 431 Pfam MAC/Perforin domain 104 316 IPR020864 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g02011 Cca-Chr1 47012247 47018335 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g02011 - - gmx:100817248 706.057
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g02011 01 47012247 47018335 Cca01g02011 01 47012247 47018335 ECH