Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g00939 ATGGCAAGTTTGAGAGTTTCTTGTATGGTTGCATTGATCTGCATGGTTGTTATTACTGCACCAATAGCAGAGGCTGCAGTCTCATGCGGAGCAGTAACCGGTGCCCTTGTCCCATGCATTCCTTATCTTACGAGTGGCCGTGGTCCTTCACCACAATGCTGTGGTGGAGTGAGGAGACTTAACGCGGTGGCCCAAACTACCCCCGACCGTAAGGCCGCTTGCAACTGCTTGAAAGGTGCTGCTGGTTCCGTTCGTGGTTTGAATCCCAACGCTGCTGCTACTCTCCCTGGCAAATGTGGTGTTAGACTACCATACAGGTTTAGCACCTCCACCAACTGCGCAACTATCAGATTCTAA 357 0.5126 MASLRVSCMVALICMVVITAPIAEAAVSCGAVTGALVPCIPYLTSGRGPSPQCCGGVRRLNAVAQTTPDRKAACNCLKGAAGSVRGLNPNAAATLPGKCGVRLPYRFSTSTNCATIRF 118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g00939 118 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 28 115 IPR036312 -
Vivi5g00939 118 ProSitePatterns Plant lipid transfer proteins signature. 95 116 IPR000528 GO:0006869|GO:0008289
Vivi5g00939 118 Gene3D - 26 118 IPR036312 -
Vivi5g00939 118 CDD nsLTP1 27 113 - -
Vivi5g00939 118 PANTHER NON-SPECIFIC LIPID-TRANSFER PROTEIN 2-RELATED 7 114 IPR000528 GO:0006869|GO:0008289
Vivi5g00939 118 SMART aai_6 29 113 IPR016140 -
Vivi5g00939 118 Pfam Protease inhibitor/seed storage/LTP family 29 113 IPR016140 -
Vivi5g00939 118 FunFam Non-specific lipid-transfer protein 26 117 - -
Vivi5g00939 118 PRINTS Plant phospholipid transfer protein signature 104 115 IPR000528 GO:0006869|GO:0008289
Vivi5g00939 118 PRINTS Plant phospholipid transfer protein signature 28 44 IPR000528 GO:0006869|GO:0008289
Vivi5g00939 118 PRINTS Plant phospholipid transfer protein signature 69 84 IPR000528 GO:0006869|GO:0008289
Vivi5g00939 118 PRINTS Plant phospholipid transfer protein signature 48 62 IPR000528 GO:0006869|GO:0008289
Vivi5g00939 118 PRINTS Plant phospholipid transfer protein signature 86 103 IPR000528 GO:0006869|GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g00939 Vivi-Chr5 20642266 20643079 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g00939 7 117 Acyl Lipid Metabolism Gene Families AT5G59320 49.550 8.35e-34 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g00939 - - psat:127108121 168.318