Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g00808 ATGGCAAACATGAAGGTAGCATGTGTGGTTTTGTTGATTTGCATGATAATTGCACCAATTTCAGAAGCTGCAATCTCATGTGGAGCTGTAAATGGTGCTCTTGCTCCATGCATTGGTTACCTTAGAGGTGGTCCTGGTCCATTTCCACCATGTTGTGCTGGAGTTAGAAGACTCAAAGCCGCCGCGACAACGACACCTGCTCGTCAAGCTGCTTGCAACTGCTTGAAAAGTGCAGCCCGTGCTATTTCTGGTTTGAATGCTAACAGAGCAGGTGCTCTTCCCGGCAGATGCGGTGTTAGCATTCCTTATAAGATCAGTACCTCCACCAACTGTGCTACCATCAGGGCTTGA 351 0.4815 MANMKVACVVLLICMIIAPISEAAISCGAVNGALAPCIGYLRGGPGPFPPCCAGVRRLKAAATTTPARQAACNCLKSAARAISGLNANRAGALPGRCGVSIPYKISTSTNCATIRA 116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g00808 116 PRINTS Plant phospholipid transfer protein signature 26 42 IPR000528 GO:0006869|GO:0008289
Trre7g00808 116 PRINTS Plant phospholipid transfer protein signature 102 113 IPR000528 GO:0006869|GO:0008289
Trre7g00808 116 PRINTS Plant phospholipid transfer protein signature 84 101 IPR000528 GO:0006869|GO:0008289
Trre7g00808 116 PRINTS Plant phospholipid transfer protein signature 46 60 IPR000528 GO:0006869|GO:0008289
Trre7g00808 116 PRINTS Plant phospholipid transfer protein signature 67 82 IPR000528 GO:0006869|GO:0008289
Trre7g00808 116 ProSitePatterns Plant lipid transfer proteins signature. 93 114 IPR000528 GO:0006869|GO:0008289
Trre7g00808 116 PANTHER NON-SPECIFIC LIPID-TRANSFER PROTEIN 2-RELATED 5 112 IPR000528 GO:0006869|GO:0008289
Trre7g00808 116 CDD nsLTP1 25 111 - -
Trre7g00808 116 FunFam Non-specific lipid-transfer protein 24 115 - -
Trre7g00808 116 Gene3D - 24 116 IPR036312 -
Trre7g00808 116 SMART aai_6 27 111 IPR016140 -
Trre7g00808 116 Pfam Protease inhibitor/seed storage/LTP family 27 111 IPR016140 -
Trre7g00808 116 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 25 113 IPR036312 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g00808 Trre-Chr7 5356366 5358240 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g00808 4 115 Acyl Lipid Metabolism Gene Families AT2G38540 63.793 6.06e-38 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g00808 - - psat:127104660 159.073