Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g00896 ATGGCCAGCATCAAGTGTGCGTGCGTCGTTGCCCTCCTGTGCTTGGTGGTTGCCACCGCACCCACGGCACATGCCATCACCTGCGGCCAGGTCACAAGTTCCCTCACTTCATGCATCCCATTCCTCACCAAGGGTGGGGACGTGCCGCCGCCATGCTGCACCGGAGTGAAGTCCCTCAACGCCGCCGCAAAGACCACCCCGGACCGCCAGGCCGTGTGCAACTGCCTCAAAAGCGCCGCCGCCAGCATCAGTGGATTCAATGCTAACAACGCAGCCGTACTCCCGGGCAAGTGTGGCGTCACCATCCCCTACAAGATCAGCACCTCCACCAACTGCGCTAATATCAAGTTTTGA 354 0.6073 MASIKCACVVALLCLVVATAPTAHAITCGQVTSSLTSCIPFLTKGGDVPPPCCTGVKSLNAAAKTTPDRQAVCNCLKSAAASISGFNANNAAVLPGKCGVTIPYKISTSTNCANIKF 117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g00896 117 CDD nsLTP1 26 112 - -
Vian9g00896 117 ProSitePatterns Plant lipid transfer proteins signature. 94 115 IPR000528 GO:0006869|GO:0008289
Vian9g00896 117 FunFam Non-specific lipid-transfer protein 25 116 - -
Vian9g00896 117 Gene3D - 25 116 IPR036312 -
Vian9g00896 117 PRINTS Plant phospholipid transfer protein signature 103 114 IPR000528 GO:0006869|GO:0008289
Vian9g00896 117 PRINTS Plant phospholipid transfer protein signature 27 43 IPR000528 GO:0006869|GO:0008289
Vian9g00896 117 PRINTS Plant phospholipid transfer protein signature 47 61 IPR000528 GO:0006869|GO:0008289
Vian9g00896 117 PRINTS Plant phospholipid transfer protein signature 85 102 IPR000528 GO:0006869|GO:0008289
Vian9g00896 117 PRINTS Plant phospholipid transfer protein signature 68 83 IPR000528 GO:0006869|GO:0008289
Vian9g00896 117 PANTHER NON-SPECIFIC LIPID-TRANSFER PROTEIN 2-RELATED 6 113 IPR000528 GO:0006869|GO:0008289
Vian9g00896 117 SMART aai_6 28 112 IPR016140 -
Vian9g00896 117 Pfam Protease inhibitor/seed storage/LTP family 28 112 IPR016140 -
Vian9g00896 117 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 26 114 IPR036312 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g00896 Vian-Chr9 15835013 15836118 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g00896 8 116 Acyl Lipid Metabolism Gene Families AT5G59320 58.716 3.21e-37 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g00896 - - gmx:100306510 168.318