Hierarchical alignments with the P. vulgaris genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Pvu Acco Accr Adu Aed Aev Ahy_1 Ahy_2 Aip Alju Amo_1 Amo_2 Apr Arst Bach Bisa Bva Car Cca Dere Dod Enph Glsi Gma_1 Gma_2 Gso_1 Gso_2 Lal_1 Lal_2 Lal_3 Lan_1 Lan_2 Lan_3 Lapu Lasa Lele_1 Lele_2 Lele_3 Lele_4 Lja Mal Mepo Mesa Mibi Mtr Phac Phco Prci Psa Pste Pumo Rops Seca Spst Ssu Sto Tpr Trre Tsu Vian Vifa Vimu Viun Vivi Vra
Pvu10g0719 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu10g0720 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu10g0721 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu10g0722 . . . Aed2g0976 Aev02g1963 . . . . . . Apr10g0853 . . . . Car06g02734 Cca01g02017 . Dod07g1677 . . . Gma01g01360 Gso1g1126 Gso3g0306 Lal14g0818 . Lal19g0292 . Lan1g0717 . . Lasa7g00697 . . . . Lja3g3816 Mal7g0899 Mepo2g00841 Mesa13g04522 . Mtr4g0797 . . . . Pste6g00269 Pumo7g01744 . Seca2g01281 . Ssu4g2499 . Tpr4g1028 Trre7g00802 Tsu06g00741 Vian9g00895 Vifa2g05040 Vimu9g00966 Viun10g01442 Vivi5g01297 .
Pvu10g0723 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu10g0724 . . . Aed2g0975 Aev02g1965 . . . . . . Apr10g0855 . . . . . Cca01g02018 . Dod07g1678 . . . Gma01g01361 Gso1g1127 Gso3g0305 . . Lal19g0291 . Lan1g0719 . . Lasa7g00696 . . . . Lja3g3817 Mal7g0897 Mepo2g00840 Mesa13g04523 . Mtr4g0796 . . . . Pste6g00264 Pumo7g01745 Rops4g01152 Seca4g10956 . Ssu4g2500 . Tpr4g1027 Trre7g00800 Tsu06g00739 Vian9g00894 Vifa2g05041 . Viun10g01444 Vivi5g01296 .
Pvu10g0725 . . . Aed2g0974 . . . . . . . Apr10g0856 . . . . . Cca01g02019 . . . . . Gma01g01362 Gso1g1129 Gso3g0304 . . . . . . . . . . . . . . . . . . . . . . Pste6g00261 Pumo7g01746 . . . Ssu4g2502 . . . . Vian9g00893 . . Viun10g01446 . .
Pvu10g0726 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu10g0727 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu10g0728 . . . Aed2g0971 Aev02g1966 . . . . . . Apr10g0857 . . . Bva02g00501 Car06g02568 Cca01g02020 . Dod07g1679 . . . Gma01g01363 . . Lal14g0819 . . Lan12g0177 . . . . . . . . Lja3g3818 Mal7g0456 Mepo2g00527 . . Mtr4g0495 . . . . . . . . . Ssu4g2503 . Tpr4g0789 . Tsu06g00491 . Vifa2g05043 . . . .
   
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Select Species Gene Chromosome Start End Strand
Vifa Vifa2g05043 Chr2 1499047360 1499049841 +
Pvu Pvu10g0719 Chr10 18036972 18038374 +
Pvu Pvu10g0720 Chr10 18039480 18041125 -
Pvu Pvu10g0721 Chr10 18045885 18050794 -
Pvu Pvu10g0722 Chr10 18068449 18069557 -
Aed Aed2g0976 Chr2 7685723 7687012 -
Aev Aev02g1963 Chr02 21425618 21426827 +
Apr Apr10g0853 Chr10 20877082 20877867 +
Car Car06g02734 Chr06 37089490 37091149 -
Cca Cca01g02017 Chr01 47084453 47085965 +
Dod Dod07g1677 Chr07 44627086 44628140 +
Gma Gma01g01360 Chr01 47363609 47364784 +
Gso Gso1g1126 Chr1 45720795 45722404 +
Gso Gso3g0306 Chr3 4559051 4560397 -
Lal Lal14g0818 Chr14 10260087 10261695 +
Lal Lal19g0292 Chr19 2922927 2924494 -
Lan Lan1g0717 Chr1 16396328 16397619 +
Lasa Lasa7g00697 Chr7 41898446 41898919 -
Lja Lja3g3816 Chr3 75235609 75237323 +
Mal Mal7g0899 Chr7 24566541 24569703 -
Mepo Mepo2g00841 Chr2 10588339 10589592 -
Mesa Mesa13g04522 Chr13 71290858 71291638 +
Mtr Mtr4g0797 Chr4 10295878 10297077 -
Pste Pste6g00269 Chr6 886294 892378 -
Pumo Pumo7g01744 Chr7 45893294 45894699 +
Seca Seca2g01281 Chr2 20817418 20818366 -
Ssu Ssu4g2499 Chr4 63104281 63105073 +
Tpr Tpr4g1028 Chr4 9900858 9901951 -
Trre Trre7g00802 Chr7 5299926 5300303 -
Tsu Tsu06g00741 Chr06 6570563 6572253 -
Vian Vian9g00895 Chr9 15787239 15795202 +
Vifa Vifa2g05040 Chr2 1498342247 1498343264 +
Vimu Vimu9g00966 Chr9 16203585 16205172 +
Viun Viun10g01442 Chr10 28797054 28798152 -
Vivi Vivi5g01297 Chr5 35144160 35145205 -
Pvu Pvu10g0723 Chr10 18070605 18071533 +
Pvu Pvu10g0724 Chr10 18089873 18094130 -
Aed Aed2g0975 Chr2 7674607 7687503 +
Aev Aev02g1965 Chr02 21436427 21440086 -
Apr Apr10g0855 Chr10 20886007 20889048 -
Cca Cca01g02018 Chr01 47086683 47090667 -
Dod Dod07g1678 Chr07 44632748 44636670 -
Gma Gma01g01361 Chr01 47377490 47381407 -
Gso Gso1g1127 Chr1 45725858 45730115 -
Gso Gso3g0305 Chr3 4552980 4557964 +
Lal Lal19g0291 Chr19 2916611 2920602 +
Lan Lan1g0719 Chr1 16427401 16431523 -
Lasa Lasa7g00696 Chr7 41854885 41858685 +
Lja Lja3g3817 Chr3 75252037 75255716 -
Mal Mal7g0897 Chr7 24501916 24506968 +
Mepo Mepo2g00840 Chr2 10582468 10586242 +
Mesa Mesa13g04523 Chr13 71295554 71301018 -
Mtr Mtr4g0796 Chr4 10287618 10293317 +
Pste Pste6g00264 Chr6 874021 884395 +
Pumo Pumo7g01745 Chr7 45898264 45903414 -
Rops Rops4g01152 Chr4 31181280 31186176 -
Seca Seca4g10956 Chr4 247367477 247372416 -
Ssu Ssu4g2500 Chr4 63111236 63115989 -
Tpr Tpr4g1027 Chr4 9894532 9898719 +
Trre Trre7g00800 Chr7 5293405 5298298 +
Tsu Tsu06g00739 Chr06 6558576 6562582 +
Vian Vian9g00894 Chr9 15721220 15724952 +
Vifa Vifa2g05041 Chr2 1498345374 1498348910 -
Viun Viun10g01444 Chr10 28811807 28816156 -
Vivi Vivi5g01296 Chr5 35138490 35142372 +
Pvu Pvu10g0725 Chr10 18112529 18115951 -
Aed Aed2g0974 Chr2 7670671 7674454 +
Apr Apr10g0856 Chr10 20892159 20895432 -
Cca Cca01g02019 Chr01 47094318 47098475 -
Gma Gma01g01362 Chr01 47390111 47393243 -
Gso Gso1g1129 Chr1 45738703 45741424 -
Gso Gso3g0304 Chr3 4546878 4550768 -
Pste Pste6g00261 Chr6 865354 866472 +
Pumo Pumo7g01746 Chr7 45906379 45909496 -
Ssu Ssu4g2502 Chr4 63124086 63126236 -
Vian Vian9g00893 Chr9 15704742 15705914 +
Viun Viun10g01446 Chr10 28837136 28839982 -
Pvu Pvu10g0726 Chr10 18137299 18138181 -
Pvu Pvu10g0727 Chr10 18146955 18148066 -
Pvu Pvu10g0728 Chr10 18178692 18182498 +
Aed Aed2g0971 Chr2 7653916 7657624 -
Aev Aev02g1966 Chr02 21451464 21453762 +
Apr Apr10g0857 Chr10 20904007 20908351 +
Bva Bva02g00501 Chr02 6373512 6377702 +
Car Car06g02568 Chr06 30610886 30615852 -
Cca Cca01g02020 Chr01 47111036 47115131 +
Dod Dod07g1679 Chr07 44650525 44653054 +
Gma Gma01g01363 Chr01 47407270 47409250 +
Lal Lal14g0819 Chr14 10281283 10283747 +
Lan Lan12g0177 Chr12 2566117 2569155 -
Lja Lja3g3818 Chr3 75268883 75271547 +
Mal Mal7g0456 Chr7 12012420 12015047 -
Mepo Mepo2g00527 Chr2 6263649 6268941 -
Mtr Mtr4g0495 Chr4 6258181 6263196 -
Ssu Ssu4g2503 Chr4 63151620 63155444 +
Tpr Tpr4g0789 Chr4 7356938 7361141 -
Tsu Tsu06g00491 Chr06 4152169 4156758 -
Vifa Vifa2g05043 Chr2 1499047360 1499049841 +