Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01148 ATGTGCACTGGTGCTGAATCTCGAGCAAATATAAAGGGTGAGGCTGTGATTTCAAAGGTTGGAGAATACCATGAAAATAGAATGGCAACCACAGAAGCTGGTGAAAGAACTTGCAACTGTGGCACAAGCCTTCTTCAACGAATACATCATCACCTCACTCCACTTCTTCCTAGTCTCTCTCTCTCTGAGGTGAAAGAAGAGTTGCAATCACTTGCAAAGGTTGCATGTCCCATAATAATGACTAGCCTAATGTTGTACTCTAGATCTGCTGTTTCTATGCTCTTCTTGGGTCGCCAAGGAAAAGCAGAGCTAGCTGGAGGATCACTAGCACTTGGGTTTGCTAACATTACAGCTAATTCAGTCCTAAAAGGCCTCACTTTGGGAATGGATCCAATTTGTTGCCAAGCATATGGAGCCAAGAGATGGTCAGTTCTCAAGCAAACCTTTTACAGAATGCTATGTCTCCTCCTAGTTGTTGCCATACCCATTTCAATTTTATGGCTAAACATGGAACCCATCCTTGGAATGCTAGGTCAAGACCCTGAAGTCATAAAAGTTGCCAAAGTTTACATGGTCTTCTCTATTCCAGAATTGCTAGCTCAAGCTCATCTCAATCCATTGAGGACTTTCTTAAGAACTCAAGGGTTAACCACCCCAGTTACTATTGCTGCATCTTGTGCAGCACTATTACACCTTCCCATCAATTATTTCTTGGCTACATACCTAAACTTAGGGGTAAAGGGAATTGCATTAGCTACTGGTTTGAATTCCATAAACATGACTCTAGGCTTATTGCTTTATCTTTTGTTCTCAAAGAAACCATTGAAACCTTGGCAAGGAGCTACAATTCTCTCAGCCTTTCATGGGTGGAGACCATTGCTAAGTCTTGCAATCCCTAGCTGCATTTCAGTTTGCTTGGAGTGGTGGTGGTATGAGATAATGCTCTTTCTTTGTGGCGTGTTGAGCAACCCACAAAGCACAGTTGCTACCATGGGAATCCTTATTCAAACACTTGGCTTCTTGTATGTGTTCCCATTTTCACTTAGTCAAGCACTAACAACAAGAATTGGTCACTCATTAGGTGCAGGGCAACCTTCACGTGCCCAAAGTACTGCCATAATTGGATTTGTTTTAGCATTTATAATTGGGATCTTAGCCTTCATGTTGTTGATGTCTGTGAAGAAAAACTGGGGGAAACTTTTTACTGATGAGACTCAAATTATTGAAATGGTCAGAACTATACTTCCAATTTTGGGGATATGTGAAGTTAGCAATTGGACTCAAACAGTGTCATGTGGGATTTTATCAGGGACTGCACGTCCTTATGTGGGCGCTAGAATAAACTTGTGTGCATTTTACCTAATTGGTTTGCCAGTTGCTATTTTTGCTACATTCATCTACAAATATGAATTGGTAGGTTTATGGTTTGGAATGTTAGCAGCTCAGTTTTCTTGTGTTTGTATGATGGTGTACACATTGATTCAAACAGATTGGGGGCAGCAAACTAAGAGAGCAGTGGAGCTAGCTCAGAAAACATCAGAGCAGGAAAATGTAAATGATGAGGAAAGTGGGCTGCTTGATTCTGAATAA 1590 0.4126 MCTGAESRANIKGEAVISKVGEYHENRMATTEAGERTCNCGTSLLQRIHHHLTPLLPSLSLSEVKEELQSLAKVACPIIMTSLMLYSRSAVSMLFLGRQGKAELAGGSLALGFANITANSVLKGLTLGMDPICCQAYGAKRWSVLKQTFYRMLCLLLVVAIPISILWLNMEPILGMLGQDPEVIKVAKVYMVFSIPELLAQAHLNPLRTFLRTQGLTTPVTIAASCAALLHLPINYFLATYLNLGVKGIALATGLNSINMTLGLLLYLLFSKKPLKPWQGATILSAFHGWRPLLSLAIPSCISVCLEWWWYEIMLFLCGVLSNPQSTVATMGILIQTLGFLYVFPFSLSQALTTRIGHSLGAGQPSRAQSTAIIGFVLAFIIGILAFMLLMSVKKNWGKLFTDETQIIEMVRTILPILGICEVSNWTQTVSCGILSGTARPYVGARINLCAFYLIGLPVAIFATFIYKYELVGLWFGMLAAQFSCVCMMVYTLIQTDWGQQTKRAVELAQKTSEQENVNDEESGLLDSE* 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01148 529 PANTHER MULTIDRUG RESISTANCE PROTEIN 63 498 - -
Rops4g01148 529 Pfam MatE 77 237 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Rops4g01148 529 Pfam MatE 299 461 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Rops4g01148 529 NCBIfam MATE family efflux transporter 77 475 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Rops4g01148 529 CDD MATE_eukaryotic 67 504 IPR045069 GO:0042910|GO:1990961
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01148 Rops-Chr4 30974471 30979999 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01148 K03327 - gmx:106798137 870.922
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g02087 8 48736829 48743842 Rops4g01148 4 30974471 30979999 PCT